Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M14
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 79 2e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 79 2e-16
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 28 0.42
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 1.7
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 2.3
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 3.0
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.0
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 3.9
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 3.9
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 5.2
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 5.2
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 6.9
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 24 6.9
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 24 6.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 6.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 6.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 24 6.9
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 24 9.1
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 24 9.1
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 79.4 bits (187), Expect = 2e-16
Identities = 53/121 (43%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWW--KY*VPCA 195
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH V K+
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 196 ASGHR*LLLGIGMFNSQNPYH*CCV*CI*QMNWCVQ-RPLVKNAIVVVXATPFRQWYESH 372
SG+ G V N V+ L K+AIV + A PFR WYE+H
Sbjct: 61 DSGN----FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETH 116
Query: 373 Y 375
Y
Sbjct: 117 Y 117
Score = 65.3 bits (152), Expect = 3e-12
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +2
Query: 161 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 283
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SN
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSN 87
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 79.4 bits (187), Expect = 2e-16
Identities = 53/121 (43%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWW--KY*VPCA 195
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH V K+
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60
Query: 196 ASGHR*LLLGIGMFNSQNPYH*CCV*CI*QMNWCVQ-RPLVKNAIVVVXATPFRQWYESH 372
SG+ G V N V+ L K+AIV + A PFR WYE+H
Sbjct: 61 DSGN----FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETH 116
Query: 373 Y 375
Y
Sbjct: 117 Y 117
Score = 65.3 bits (152), Expect = 3e-12
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +2
Query: 161 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 283
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SN
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSN 87
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 28.3 bits (60), Expect = 0.42
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -2
Query: 206 CPDAAHGT*YF--HHVNETEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 60
CPD + G Y V + ++R PS+++A ++ LF+R+ ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 1.7
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 298 RTNSFVRCIIHNINDTGFAS*TFRSPREVTGVQ--TQRTVLSISTT*TKRSGYAEDRAWC 125
+T + VR + + N+ FA + P ++G + T + ++S + K ++ DRAWC
Sbjct: 216 QTKACVRILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAWC 275
Query: 124 LQRD 113
+ ++
Sbjct: 276 IAQN 279
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 2.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 10 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 126
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 282 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 196
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 25.4 bits (53), Expect = 3.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 174 EILSTVRC-VWTP-VTSLGDRNVQLAKPVSLMLCIMHLTNELVRTKTLGQECNC 329
E++S C ++ P + S+ V + PV L+ ++H NELV L + C
Sbjct: 3 EVISQPPCNIFRPLILSMHLSPVSILSPVLLIYLVIHSQNELVSMSWLFRSTIC 56
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 179 TKYRALRLDTGNFSWGSECSTRKTRI 256
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 3.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 37 DHWHKRRATGGKRAPIRKKRKYE 105
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 10 DP-TKMGISRDHWHKRRATGGKRAPIR 87
DP T + SR H H+ R+T K P R
Sbjct: 27 DPVTVLDRSRTHHHRGRSTSSKAQPFR 53
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 243 RVEHSDPQEKLPVSRRSARYLVFPPRERNGVDTLRTEPGV 124
+VE + + + V R+ R PP RN + LR+EP V
Sbjct: 315 QVETENVENEAGVPRKRGR----PPGARNKIKRLRSEPSV 350
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 111 ASRCKHQARSSAYPLRFVHVVEIL 182
A+ CK SS P+ F H +E L
Sbjct: 488 ANNCKILKTSSVLPIPFAHAIESL 511
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 371 WDSYHCLNGVAXTTTIAF-LTKGLCTHQFI 285
+DS++ L+ T + L KG CTHQF+
Sbjct: 73 FDSHYALSASWDKTIRLWDLEKGECTHQFV 102
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 291 IHLLDALYTTSMIRVLRVEHSDPQE 217
I LL+A Y M RVL+++ P+E
Sbjct: 266 IELLEAEYENEMDRVLQMQIGGPEE 290
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 303 LYAPIHLLDALYTTSMIRVLR 241
LYAP+HLL A + + V R
Sbjct: 1346 LYAPLHLLSATFPRQLEMVAR 1366
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 303 LYAPIHLLDALYTTSMIRVLR 241
LYAP+HLL A + + V R
Sbjct: 1346 LYAPLHLLSATFPRQLEMVAR 1366
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 80 PYARRGSMS*GVP--LQTPGSVLSVSTPFRSRGGNTKY 187
PY R ++ +P L G +LSV SRG TKY
Sbjct: 1174 PYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = +3
Query: 171 VEILSTVRCVWTPVTSLGDRNVQLAKPVSLML 266
++ T+ CV+ P + +G + ++ P+S +L
Sbjct: 307 LQTAGTILCVFFPYSLIGHKELRFVYPISPIL 338
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 38 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVS 151
I + E P G V PY++RG+ + GS VS
Sbjct: 223 ILSLYEQDPEGFVNPYSKRGAAALANSENNKGSEAGVS 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,462
Number of Sequences: 5004
Number of extensions: 37884
Number of successful extensions: 89
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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