Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M14
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 77 5e-15
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 77 6e-15
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 2.8
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 27 4.9
03_06_0019 - 31078669-31080081 27 4.9
07_03_1240 + 25095472-25095942,25096021-25096314,25096563-250973... 27 6.5
11_03_0077 + 9657875-9658017,9658702-9658819,9659824-9659914,966... 26 8.6
05_01_0316 + 2476689-2477030,2477164-2477283,2477742-2477819,247... 26 8.6
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 26 8.6
01_02_0048 - 10626467-10627498,10628522-10628617 26 8.6
01_01_0116 - 861044-861405,861495-861633,862078-862501,862634-86... 26 8.6
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 77.0 bits (181), Expect = 5e-15
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +2
Query: 161 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 283
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASN
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASN 88
Score = 62.5 bits (145), Expect = 1e-10
Identities = 52/132 (39%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGR-PA-----ANTRLGPQRIHSVSFTW---- 171
MGISRD HKRRATGGK+ RKKRKYELGR PA +N + R+ + W
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 172 ---WKY*VPCAASGHR*LLLGIGMFNSQNPYH*CCV*CI*QMNWCVQ-RPLVKNAIVVVX 339
Y A + +L + ++N+ N N V+ + LVK+AIV V
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDV-VYNASN-------------NELVRTQTLVKSAIVQVD 106
Query: 340 ATPFRQWYESHY 375
A PF+QWY +HY
Sbjct: 107 AAPFKQWYLTHY 118
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 76.6 bits (180), Expect = 6e-15
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +2
Query: 161 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 283
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASN
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASN 88
Score = 62.9 bits (146), Expect = 8e-11
Identities = 52/132 (39%), Positives = 68/132 (51%), Gaps = 14/132 (10%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGR-PA-----ANTRLGPQRIHSVSFTW---- 171
MGISRD HKRRATGGK+ RKKRKYELGR PA +N + R+ + W
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALR 60
Query: 172 ---WKY*VPCAASGHR*LLLGIGMFNSQNPYH*CCV*CI*QMNWCVQ-RPLVKNAIVVVX 339
Y A + +L + ++N+ N N V+ + LVK+AIV V
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDV-VYNASN-------------NELVRTQTLVKSAIVQVD 106
Query: 340 ATPFRQWYESHY 375
A PF+QWY +HY
Sbjct: 107 AAPFKQWYLTHY 118
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 34 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 156
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 49 KRRATGGKRAPIRKKRKYELGRPAA 123
KRR GG+RA R+K + E GR A
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKA 69
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 49 KRRATGGKRAPIRKKRKYELGRPAA 123
KRR GG+RA R+K + E GR A
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKA 105
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 130 WCLQRDALTHTSSSCVWAH 74
WC QR L H S++C +H
Sbjct: 340 WCPQRRVLAHASTACFVSH 358
>07_03_1240 +
25095472-25095942,25096021-25096314,25096563-25097383,
25097466-25097636,25097716-25098016
Length = 685
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 88 KKRKYELGRPAANTRLGPQRIHSV-SFTWWKY*VPCAASGHR 210
K+R+Y++ R A T+ P R + S WK+ +P +S +R
Sbjct: 175 KRREYDILRKALGTKEHPDRTRGIGSDVPWKHGLPQYSSQYR 216
>11_03_0077 +
9657875-9658017,9658702-9658819,9659824-9659914,
9660055-9660144,9660236-9660336,9660752-9660892
Length = 227
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -2
Query: 203 PDAAHGT*YFHHVNETEWIR*GPSLVFAAGRPNSYFLFLR 84
PD HG VN TEW+ S V A + S F FLR
Sbjct: 64 PDLFHGDPATTTVNFTEWLE-SHSPVKEAEKAKSIFAFLR 102
>05_01_0316 +
2476689-2477030,2477164-2477283,2477742-2477819,
2477956-2478132,2478317-2478394,2478694-2478866,
2478994-2479149,2479573-2479633,2479831-2480049
Length = 467
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 105 VRASRCKHQARSSAYPLRFVHVVEILSTVRCVWTPVTSLGDRNV 236
+ A CKH S R V+ L +RC ++PV S G R +
Sbjct: 340 LEARHCKHPNDQSLATYRGHSVLRTL--IRCYFSPVYSTGQRYI 381
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = -1
Query: 225 PQEKLPVSRRSARYLVFPPRERNGVDTLRTEPGVCSGTP*LILPLLAYGRTFPTGGPSLM 46
P K P S A+ PP ER + + + TP + P A+ PSL
Sbjct: 138 PPAKAP-SHSHAKTPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLP 196
Query: 45 PVIP 34
P P
Sbjct: 197 PAEP 200
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 130 WCLQRDALTHTSSSCVWAHVSHRWPFAY 47
+CLQ D T ++CV A +H W F+Y
Sbjct: 131 YCLQSDDDTFVCAACVAA--AHGWRFSY 156
>01_01_0116 -
861044-861405,861495-861633,862078-862501,862634-863131,
863217-863249,863490-863680,863828-864132,864196-864208
Length = 654
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 110 GVPLQTPGSVLSVSTPFRSRG 172
G P T G++ SVS+PFR RG
Sbjct: 18 GCPPFTCGNLSSVSSPFRRRG 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,248
Number of Sequences: 37544
Number of extensions: 272907
Number of successful extensions: 687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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