Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M14
(378 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 108 7e-24
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 108 7e-24
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 108 7e-24
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 108 7e-24
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 103 3e-22
AE006464-22|AAK61254.1| 1053|Homo sapiens Similar to pre-pro-meg... 29 5.0
BC035776-1|AAH35776.1| 1184|Homo sapiens cartilage intermediate ... 29 6.6
AY358904-1|AAQ89263.1| 1184|Homo sapiens CILP protein. 29 6.6
AF035455-1|AAF14689.1| 1184|Homo sapiens cartilage intermediate ... 29 6.6
AF035408-1|AAC33838.1| 1184|Homo sapiens cartilage intermediate ... 29 6.6
AB022430-1|BAA76692.1| 1184|Homo sapiens cartilage intermediate ... 29 6.6
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 108 bits (259), Expect = 7e-24
Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWWKY*VPCAAS 201
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+V V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNK 53
Query: 202 GHR*LLLGIGMFNSQNPYH*CC--------V*CI*QMNWCVQ-RPLVKNAIVVVXATPFR 354
+R L L +G F+ + CC V N V+ + LVKN IV++ +TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 355 QWYESHY 375
QWYESHY
Sbjct: 111 QWYESHY 117
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/73 (60%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 68 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 244
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 245 KTRIIDVVYNASN 283
KTRIIDVVYNASN
Sbjct: 75 KTRIIDVVYNASN 87
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 108 bits (259), Expect = 7e-24
Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWWKY*VPCAAS 201
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+V V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNK 53
Query: 202 GHR*LLLGIGMFNSQNPYH*CC--------V*CI*QMNWCVQ-RPLVKNAIVVVXATPFR 354
+R L L +G F+ + CC V N V+ + LVKN IV++ +TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 355 QWYESHY 375
QWYESHY
Sbjct: 111 QWYESHY 117
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/73 (60%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 68 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 244
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 245 KTRIIDVVYNASN 283
KTRIIDVVYNASN
Sbjct: 75 KTRIIDVVYNASN 87
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 108 bits (259), Expect = 7e-24
Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWWKY*VPCAAS 201
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+V V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNK 53
Query: 202 GHR*LLLGIGMFNSQNPYH*CC--------V*CI*QMNWCVQ-RPLVKNAIVVVXATPFR 354
+R L L +G F+ + CC V N V+ + LVKN IV++ +TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 355 QWYESHY 375
QWYESHY
Sbjct: 111 QWYESHY 117
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/73 (60%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 68 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 244
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 245 KTRIIDVVYNASN 283
KTRIIDVVYNASN
Sbjct: 75 KTRIIDVVYNASN 87
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 108 bits (259), Expect = 7e-24
Identities = 64/127 (50%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWWKY*VPCAAS 201
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+V V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVR-------VRGGNK 53
Query: 202 GHR*LLLGIGMFNSQNPYH*CC--------V*CI*QMNWCVQ-RPLVKNAIVVVXATPFR 354
+R L L +G F+ + CC V N V+ + LVKN IV++ +TP+R
Sbjct: 54 KYRALRLDVGNFSWGSE---CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR 110
Query: 355 QWYESHY 375
QWYESHY
Sbjct: 111 QWYESHY 117
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/73 (60%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 68 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 244
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 245 KTRIIDVVYNASN 283
KTRIIDVVYNASN
Sbjct: 75 KTRIIDVVYNASN 87
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 103 bits (246), Expect = 3e-22
Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Frame = +1
Query: 22 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVSFTWWKY*VPCAAS 201
MGISRD+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVR--------GGC 52
Query: 202 GHR*LLLGIGMFNSQNPYH*CCV*CI*QMNWCVQ-RPLVKNAIVVVXATPFRQWYESHY 375
+ ++ + ++N+ N N V+ + LVKN IV++ +TP+RQWYESHY
Sbjct: 53 TRKTRIIDV-VYNASN-------------NELVRTKTLVKNCIVLIDSTPYRQWYESHY 97
Score = 35.9 bits (79), Expect = 0.044
Identities = 22/36 (61%), Positives = 23/36 (63%)
Frame = +2
Query: 176 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 283
NTK R+ T G C TRKTRIIDVVYNASN
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASN 67
>AE006464-22|AAK61254.1| 1053|Homo sapiens Similar to
pre-pro-megakarycyte potentiating factor precursor
protein.
Length = 1053
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 94 SSCVWAHVSHRWPFAYAS 41
+SC WA HRWP + S
Sbjct: 221 TSCAWAQAVHRWPVLWGS 238
>BC035776-1|AAH35776.1| 1184|Homo sapiens cartilage intermediate
layer protein, nucleotide pyrophosphohydrolase protein.
Length = 1184
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 232 FRSPREVTGVQTQRTVLSISTT*TKRSGYAEDRAWCLQRDALTHTSSSCVWAHVSHRWPF 53
+RS R + Q Q V+S+ + + RAW +T + +CV A + P
Sbjct: 759 YRSERFLPSEQIQGVVISVINLEPRTGFLSNPRAWGRFDSVITGPNGACVPAFCDDQSPD 818
Query: 52 AYAS 41
AY++
Sbjct: 819 AYSA 822
>AY358904-1|AAQ89263.1| 1184|Homo sapiens CILP protein.
Length = 1184
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 232 FRSPREVTGVQTQRTVLSISTT*TKRSGYAEDRAWCLQRDALTHTSSSCVWAHVSHRWPF 53
+RS R + Q Q V+S+ + + RAW +T + +CV A + P
Sbjct: 759 YRSERFLPSEQIQGVVISVINLEPRTGFLSNPRAWGRFDSVITGPNGACVPAFCDDQSPD 818
Query: 52 AYAS 41
AY++
Sbjct: 819 AYSA 822
>AF035455-1|AAF14689.1| 1184|Homo sapiens cartilage intermediate
layer protein protein.
Length = 1184
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 232 FRSPREVTGVQTQRTVLSISTT*TKRSGYAEDRAWCLQRDALTHTSSSCVWAHVSHRWPF 53
+RS R + Q Q V+S+ + + RAW +T + +CV A + P
Sbjct: 759 YRSERFLPSEQIQGVVISVINLEPRTGFLSNPRAWGRFDSVITGPNGACVPAFCDDQSPD 818
Query: 52 AYAS 41
AY++
Sbjct: 819 AYSA 822
>AF035408-1|AAC33838.1| 1184|Homo sapiens cartilage intermediate
layer protein protein.
Length = 1184
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 232 FRSPREVTGVQTQRTVLSISTT*TKRSGYAEDRAWCLQRDALTHTSSSCVWAHVSHRWPF 53
+RS R + Q Q V+S+ + + RAW +T + +CV A + P
Sbjct: 759 YRSERFLPSEQIQGVVISVINLEPRTGFLSNPRAWGRFDSVITGPNGACVPAFCDDQSPD 818
Query: 52 AYAS 41
AY++
Sbjct: 819 AYSA 822
>AB022430-1|BAA76692.1| 1184|Homo sapiens cartilage intermediate
layer protein protein.
Length = 1184
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 232 FRSPREVTGVQTQRTVLSISTT*TKRSGYAEDRAWCLQRDALTHTSSSCVWAHVSHRWPF 53
+RS R + Q Q V+S+ + + RAW +T + +CV A + P
Sbjct: 759 YRSERFLPSEQIQGVVISVINLEPRTGFLSNPRAWGRFDSVITGPNGACVPAFCDDQSPD 818
Query: 52 AYAS 41
AY++
Sbjct: 819 AYSA 822
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,497,028
Number of Sequences: 237096
Number of extensions: 1572724
Number of successful extensions: 2807
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2807
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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