Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M13
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 81 5e-17
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 81 5e-17
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 30 0.12
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 2.6
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 24 6.0
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 24 6.0
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 24 6.0
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 24 6.0
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 24 6.0
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 7.9
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 81.0 bits (191), Expect = 5e-17
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = +2
Query: 98 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 15 FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Score = 31.9 bits (69), Expect = 0.030
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 219 KYTMGKTGRVYNVTAHALXXXXXXXXXXXXXPKRINIRV 335
KY GKTG VYNVT ++ KR+N+R+
Sbjct: 55 KYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRI 93
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 81.0 bits (191), Expect = 5e-17
Identities = 36/46 (78%), Positives = 38/46 (82%)
Frame = +2
Query: 98 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 15 FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Score = 31.9 bits (69), Expect = 0.030
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 219 KYTMGKTGRVYNVTAHALXXXXXXXXXXXXXPKRINIRV 335
KY GKTG VYNVT ++ KR+N+R+
Sbjct: 55 KYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRI 93
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 127 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWERQVA 246
+ L H SW + R+ C +KGY PW R+ A
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 2.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 323 DALRYNXSANTLVDNHTES 267
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 244 RPVFPMVYFVWHT 206
R FPM Y +WHT
Sbjct: 60 REKFPMDYHIWHT 72
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 24.2 bits (50), Expect = 6.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 344 TSSNTDIDALRYNXSANTLVDNHTESMSSH 255
+SS TDID L N VD + S H
Sbjct: 3 SSSYTDIDTLAINTIRTLAVDTTAHAKSGH 32
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 196 SSKGYATQSIPWERQVAC 249
+++ YA +S PWE AC
Sbjct: 679 NARAYADESYPWEFLAAC 696
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 6.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 65 EFVIFEPCVTKLD 27
EFVIFE C+T+++
Sbjct: 726 EFVIFEACLTRIE 738
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +1
Query: 46 GSKMTNSKGYRRGTRXLVRSQVPHTWNYSALHVHESVQSWRH 171
GS +T + +R + + PH W++ +H Q+ H
Sbjct: 88 GSVLTANYNSASISRSKAKDEKPHVWHHEGKSLHPERQTSSH 129
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 183 LMSTMSPTLYTFMYVESGIVPC 118
L T PTLY F+ + G++ C
Sbjct: 1067 LQITRLPTLYRFIILFMGVISC 1088
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,842
Number of Sequences: 5004
Number of extensions: 21401
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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