Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M13
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 76 9e-15
10_08_0310 - 16669565-16669822,16670558-16670794 73 5e-14
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 29 0.78
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 1.4
08_01_0219 + 1749648-1750000,1750548-1750557 27 4.1
12_02_0410 + 18701258-18701327,18701398-18701630,18701782-187026... 27 5.5
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 5.5
08_01_0041 - 290333-290698,290854-291861 26 7.2
05_02_0096 - 6568030-6568252,6570998-6571281 26 7.2
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 26 7.2
01_03_0300 + 14782156-14782225,14782708-14782780,14782800-147830... 26 7.2
08_01_0980 + 9877030-9877307,9877727-9877837,9877928-9878009,987... 26 9.6
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 75.8 bits (178), Expect = 9e-15
Identities = 31/47 (65%), Positives = 38/47 (80%)
Frame = +2
Query: 95 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
LFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 219 KYTMGKTGRVYNVTAHALXXXXXXXXXXXXXPKRINIRV 335
K+ G+TGRV+NVT A+ KRI++RV
Sbjct: 55 KFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRV 93
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 73.3 bits (172), Expect = 5e-14
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +2
Query: 95 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
LFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 14 LFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 219 KYTMGKTGRVYNVTAHALXXXXXXXXXXXXXPKRINIRV 335
K+ G+TGRV+NVT A+ KRI++RV
Sbjct: 55 KFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRV 93
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 29.5 bits (63), Expect = 0.78
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 250 YTRPVFPMVYFVWHTLLNCTIASDVYNV-SNFVHFH 146
Y +P FP F +HT N VY + + HFH
Sbjct: 201 YPKPEFPTPSFEYHTAFNGVAFGIVYGIQQTYFHFH 236
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 155 YKVGDIVDIRGNGAVQKGMPHKVY 226
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>08_01_0219 + 1749648-1750000,1750548-1750557
Length = 120
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 141 VESGIVPCVRNLRANKXPGAAAVTLGVRHLRAL 43
V++ ++PCV L + GVRHLR L
Sbjct: 34 VDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTL 66
>12_02_0410 +
18701258-18701327,18701398-18701630,18701782-18702639,
18703006-18703865,18704285-18704395,18704486-18704567,
18704643-18704735,18704795-18704989
Length = 833
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = -2
Query: 350 GLTSSNTDIDALRYNXSAN---TLVDNHT----ESMSSHVVHATCLSHGILCVAYPFE 198
G+ + + DA + +AN T D H + M ++V A CL H IL + YP +
Sbjct: 629 GMITVHVPEDAFKDGPNANFTFTFKDLHAFFKMDKMDINLVGAWCLEHYILFLVYPMD 686
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 157 QSWRHCRHQRQWCSSKG 207
QSW +C +WC +KG
Sbjct: 255 QSWGNCVSVEEWCKNKG 271
>08_01_0041 - 290333-290698,290854-291861
Length = 457
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 12 LFLDPVKLCNTRLEDDELQGLPPRHQGTCSLAGSAHM 122
L L +KLC + DDEL P G + G H+
Sbjct: 15 LLLLLIKLCRAKTRDDELFDKLPSPPGRLPVIGHLHL 51
>05_02_0096 - 6568030-6568252,6570998-6571281
Length = 168
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 151 FHVRGERNSSMCAEPASEQVPWCRGG 74
F VRG R +C E A W GG
Sbjct: 89 FSVRGNRRCEICGETAENITGWGGGG 114
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 231 PWYTLCGIPF*TAPLPLMSTM 169
P T CGI F TA LPL+ M
Sbjct: 430 PNVTTCGIQFATAQLPLLQLM 450
>01_03_0300 +
14782156-14782225,14782708-14782780,14782800-14783076,
14783715-14783885,14783992-14784012
Length = 203
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 76 RRGTRXLVRSQVPHTWNYSA-LHVHESVQSWRHCRHQRQWCSSKGYATQSI 225
RR T R Q + SA + HE +Q WR R WC +AT ++
Sbjct: 72 RRSTTGERRMQAVVAGSTSAGVRRHEVLQ-WRRAWDNRSWCDFAPFATTNL 121
>08_01_0980 +
9877030-9877307,9877727-9877837,9877928-9878009,
9878085-9878177,9878262-9878456
Length = 252
Score = 25.8 bits (54), Expect = 9.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Frame = -2
Query: 350 GLTSSNTDIDALRYNXSAN---TLVDNHT----ESMSSHVVHATCLSHGILCVAYP 204
G+ + + DA + +AN T D H + M ++V A CL H IL + YP
Sbjct: 48 GMITVHVPEDAFKDGPNANFAFTFKDLHAFFKMDKMDINLVGAWCLEHYILFLVYP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,585,411
Number of Sequences: 37544
Number of extensions: 152831
Number of successful extensions: 504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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