Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M13
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    67   3e-12
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    29   0.94 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    29   0.94 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    29   0.94 
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    27   5.0  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    26   8.7  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 30/47 (63%), Positives = 34/47 (72%)
 Frame = +2

Query: 95  LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 235
           +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 14  MFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60



 Score = 33.5 bits (73), Expect = 0.043
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 231 GKTGRVYNVTAHALXXXXXXXXXXXXXPKRINIRV 335
           G+TGR++NVT  A+             PKRINIR+
Sbjct: 59  GRTGRIFNVTRGAVGIIVNKRVRGNILPKRINIRI 93



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 55 MTNSKGYRRGTRXL 96
          MTNSKG RRGTR +
Sbjct: 1  MTNSKGLRRGTRYM 14


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 234 FPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 103
           FP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 228 FPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 234 FPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 103
           FP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 228 FPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 234 FPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 103
           FP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 222 FPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 238 VFPMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGER 131
           +FP+  FV ++    T A  VY +SN  HF +   R
Sbjct: 66  IFPVKIFVRYSHCVGTAAMAVYEISNLSHFLIAFNR 101


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 166 SNFVHFHVRGERNSSMCAEPASEQVPWCRG 77
           SN++    R  R SSM   P   Q+ W  G
Sbjct: 220 SNWISASQRSSRKSSMGGSPDKSQIVWTTG 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,049,906
Number of Sequences: 27780
Number of extensions: 125062
Number of successful extensions: 370
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)