Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M12
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    66   2e-12
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    66   2e-12
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   4.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.8  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 65.7 bits (153), Expect = 2e-12
 Identities = 33/65 (50%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +1

Query: 49  MPREIKXIKXFLXXXXXXXXXXXXXXXNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 225
           MPR+I  IK FL               N  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 226 LPPGL 240
           LPP L
Sbjct: 61  LPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 65.7 bits (153), Expect = 2e-12
 Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = +1

Query: 49  MPREIKXIKXFLXXXXXXXXXXXXXXXNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 225
           MPR++  IK FL               N    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 226 LPPGL 240
           LPP L
Sbjct: 61  LPPAL 65


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 194 SVMTRVYRNLEHRTLNLTFSGFFFILTDLAXF 99
           S+ + +Y     R  NL  +GFFF+L  +  F
Sbjct: 344 SLCSGLYMKKTGRYRNLVIAGFFFMLMGIVSF 375


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 143 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRL 274
           S S +      TP SS       N   +YL ++ LKK   V RL
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,663
Number of Sequences: 5004
Number of extensions: 12275
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)