Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M04
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 57 8e-10
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 57 8e-10
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 28 0.53
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 1.2
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 2.1
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar... 25 2.8
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 24 6.5
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 24 8.6
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 24 8.6
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 57.2 bits (132), Expect = 8e-10
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +3
Query: 69 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 242
K EVDYS E L KS I +++LL EKQ R +D + +++L+ +
Sbjct: 4 KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60
Query: 243 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYV 362
+ F A ++ LN+ +V L K+ QLKQ++ +VQ TY+
Sbjct: 61 LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYL 100
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 57.2 bits (132), Expect = 8e-10
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +3
Query: 69 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 242
K EVDYS E L KS I +++LL EKQ R +D + +++L+ +
Sbjct: 4 KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60
Query: 243 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYV 362
+ F A ++ LN+ +V L K+ QLKQ++ +VQ TY+
Sbjct: 61 LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYL 100
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 27.9 bits (59), Expect = 0.53
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Frame = +3
Query: 66 IKMEVDYSATCDEKLPLWK----SWAAQGKIQEAIDQLLALEKQTRTGADMV-STSRILV 230
+ M + + +KLPLWK ++ +G + L + G D+ IL
Sbjct: 114 VSMAICRAGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILP 173
Query: 231 TVVQIYFEAKNWSALNDH-IVVLSKRR 308
T + EA W A H + ++K+R
Sbjct: 174 TGAPSFSEAMRWGAETYHTLKSIAKKR 200
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 1.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 45 LDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKI-QEAIDQL 167
LDA K I E +S E+L ++ W +QG I ++ DQL
Sbjct: 450 LDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQL 491
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +3
Query: 12 FKMTTNGXIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLL 170
+KM + + + AS + E + A C KL WK QE++ +L
Sbjct: 1581 YKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDSVNQESVRDIL 1633
>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 2.8
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 60 KIIKMEVDYSATCDEKLPLWKSWAAQG 140
+IIK++++ + CD++L + W A+G
Sbjct: 159 RIIKIKLESARICDQRLNNVQKWNARG 185
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 6.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 75 EVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLAL-EKQTRTGADMVSTSRI 224
E+DYSA LPL +S A G+ I + A + QT V TSR+
Sbjct: 68 EIDYSAGKYGDLPLNRSTARPGRTYTQISDISAKNDGQTVLLRARVYTSRL 118
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 75 EVDYSATCDEKLPLWKSWAAQGKIQE 152
++ Y C+E+L WK A + +I E
Sbjct: 59 KMKYEIECNERLQGWKKLAIEREISE 84
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 75 EVDYSATCDEKLPLWKSWAAQGKIQE 152
++ Y C+E+L WK A + +I E
Sbjct: 59 KMKYEIECNERLQGWKKLAIEREISE 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,388
Number of Sequences: 5004
Number of extensions: 27429
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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