Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M04
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211...    73   5e-14
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    31   0.21 
12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382           29   1.5  
12_01_0090 + 717524-719080                                             28   2.0  
10_01_0042 + 562246-563550                                             27   3.5  
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    27   4.6  

>03_06_0701 -
           35620559-35620777,35620872-35620949,35621038-35621191,
           35621279-35621391,35621487-35621586,35622193-35622389,
           35622470-35622526,35622630-35622734,35622824-35622931,
           35623651-35623848,35624022-35624024
          Length = 443

 Score = 73.3 bits (172), Expect = 5e-14
 Identities = 33/73 (45%), Positives = 47/73 (64%)
 Frame = +3

Query: 144 IQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQ 323
           +  AI+ LL +EKQ R   D+  T +  + +V++ ++A  W  LND IVVLSKRR QLKQ
Sbjct: 8   LDAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQ 67

Query: 324 AVVKMVQECYTYV 362
           A+  MVQ+   Y+
Sbjct: 68  AITAMVQKAMEYI 80


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
 Frame = +3

Query: 48  DASGKIIKMEVDYSATCDEKLPLW-----KSWAAQGKIQEAIDQLL-ALEKQTRTGADMV 209
           + +  + K+EVD S +       W     K  + Q K   A ++   A EK+TR      
Sbjct: 500 EKTAPVEKVEVDLSLSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAEKKTRLQLAQE 559

Query: 210 STSRILVTVVQIY-FEAKNWSALNDHIVVLSKRRSQLKQAVVK 335
            T   +  + +++ FE  NW   +++ +++S R +Q  + +VK
Sbjct: 560 KTVAAITHMRKVHWFEKFNWFISSENYLIISGRDAQQNELIVK 602


>12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382
          Length = 198

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +3

Query: 111 PLWKSWAAQGKIQE-----AIDQLLALEK 182
           P+WK +  QGK QE     A++QLL LEK
Sbjct: 91  PIWKWFTTQGKEQEDAYEAAMEQLLVLEK 119


>12_01_0090 + 717524-719080
          Length = 518

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +3

Query: 114 LWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRI-LVTVVQIYFEAKNWSALNDHIV 290
           LWK   A  ++   ID       + R   +++ T    LVT+  +Y EAK W  + +H+ 
Sbjct: 443 LWKMLLAACRVHGHIDLAYMFFHELR---ELILTDNGGLVTISNVYAEAKRWDDV-EHLR 498

Query: 291 VLSKRRSQLKQA 326
           +  +  S LK A
Sbjct: 499 MKVRCNSALKHA 510


>10_01_0042 + 562246-563550
          Length = 434

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +3

Query: 267 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYV 362
           S+L +HI+V ++RR+ + +AV  ++ +C T V
Sbjct: 234 SSLINHIIVGARRRATVFEAVAAVLWQCRTRV 265


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 110 QFLITCCTIVHFHFYYFST 54
           QFL+ CC   H  F +FS+
Sbjct: 425 QFLVCCCCYGHIQFVFFSS 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,283,944
Number of Sequences: 37544
Number of extensions: 169688
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)