Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M04
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...    75   2e-14
U41543-7|AAB37026.1|  284|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF099920-7|AAK29842.2|  336|Caenorhabditis elegans Hypothetical ...    26   9.7  
AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.     26   9.7  

>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 40/104 (38%), Positives = 60/104 (57%)
 Frame = +3

Query: 57  GKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 236
           G++ KME DYS   DE L L     AQ     A++ L  +EK TR GADM S +R++  +
Sbjct: 34  GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92

Query: 237 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVXK 368
            ++ FE + W  L + I+ LSK+R  +K A+ KMV++    + K
Sbjct: 93  TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDK 136


>U41543-7|AAB37026.1|  284|Caenorhabditis elegans Hypothetical
           protein F46H5.5 protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 168 LALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRR 308
           L L KQ  T  +       LV    I    +NWS   DH+  +S RR
Sbjct: 45  LHLSKQQNTTGNASRVVGCLVCFGPIKDHIENWSIKFDHVFTISCRR 91


>Z74037-5|CAA98493.3|  509|Caenorhabditis elegans Hypothetical
           protein F57B7.4 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 90  ATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTR 191
           AT +   PLW SWA + + +   +++  LE++ R
Sbjct: 136 ATQERDCPLWISWAEEEEERVLNEEIRRLEEKER 169


>AF099920-7|AAK29842.2|  336|Caenorhabditis elegans Hypothetical
           protein H06H21.8a protein.
          Length = 336

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 297 TKQLYDH*EQTSS*LQNISEPLSLGFLKWKPYQHQS 190
           T+   DH  +T + L N   P S+  L W  + HQ+
Sbjct: 299 TQNYLDHYHKTLTELSNGKAPFSMEELVWNRFVHQN 334


>AB044562-1|BAA96734.1|  509|Caenorhabditis elegans MIG-17 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 90  ATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTR 191
           AT +   PLW SWA + + +   +++  LE++ R
Sbjct: 136 ATQERDCPLWISWAEEEEERVLNEEIRRLEEKER 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,229,950
Number of Sequences: 27780
Number of extensions: 156098
Number of successful extensions: 332
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)