Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_M01
(361 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 66 1e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.29
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 2.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 2.0
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 2.7
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 2.7
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 24 6.2
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 24 6.2
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 66.5 bits (155), Expect = 1e-12
Identities = 37/95 (38%), Positives = 48/95 (50%)
Frame = +2
Query: 68 YVEPGXCRPWXADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKY 247
YVE G G GKL +VD++D RAL+D P S PRQ IR + LT +K
Sbjct: 7 YVEVGRV-VLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKL 65
Query: 248 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLXNKE 352
A + +V K W + KW S WA+KL K+
Sbjct: 66 PRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKK 100
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 0.29
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 129 TNFPFKGPSAXXGRHXPGSTXPCKRHDVLTTSLTTKQCTLE 7
T F P + G+H P S CK+ + + L KQ +L+
Sbjct: 425 TAMSFVVPKSEVGKHKPTSLESCKKDESVLRRLEKKQISLQ 465
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 2.0
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = -2
Query: 261 GAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNFPFKGPSAXXGRHX 82
G VNA RNF F+ I +G P P ++ +T +N PF H
Sbjct: 141 GIVNAAQIRNF-----FQNI--MGGNAPQPEANSEQARNANTETSNPPFASAQTQGQEHR 193
Query: 81 PGSTXPCK 58
P S P +
Sbjct: 194 PSSPNPAE 201
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -2
Query: 186 PLPGPSTSARVWSITSTTLTNFPFKG-PSAXXGRHXPGSTXPCKRHDVLTTSLTTKQCTL 10
P+PG +T ++ S T N+P+ G S ST +T S+ T L
Sbjct: 51 PVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSIL 110
Query: 9 EKA 1
+
Sbjct: 111 SNS 113
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 2.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 189 TPLPGPSTSARVWSITSTTLTNFPFKGPSAXXGRHXPGSTXP 64
TP+ P+ S+TS+ +T P G +A PGS P
Sbjct: 2 TPVQVPNLDV---SVTSSLITTAPVTGNAATISTFTPGSPEP 40
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 165 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLLVS 272
++ D AV Y N+ NS++ ++A N S PL+ +
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLIAN 167
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 6.2
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Frame = +2
Query: 32 NDVVRT---SCLLHGYVEPGXCRPW 97
NDVV T S LLH + G C PW
Sbjct: 43 NDVVATGLMSFLLHELIYFGRCIPW 67
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 211 KPTPSHKIPPQIRVHSPYSSRE 276
KP P+ ++ PQ ++SP S E
Sbjct: 377 KPKPAKELSPQATLNSPIQSAE 398
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 24.2 bits (50), Expect = 6.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 125 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAW 286
L+++++ ++ RAL D R I LNQ L+K + + + PTR AW
Sbjct: 882 LLNLIEAFNKARALRDSLDLNGKRYCIMLNQYVLSKHQ-RQLTSLPTR--EMAW 932
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,411,001
Number of Sequences: 5004
Number of extensions: 25670
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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