Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M01
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    55   1e-08
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    55   1e-08
03_05_0161 + 21400580-21401695                                         30   0.63 
07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595           27   4.4  
01_04_0054 - 15456668-15459691                                         27   4.4  
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    26   7.7  
04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878...    26   7.7  
02_02_0378 + 9561775-9562947                                           26   7.7  

>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 29/74 (39%), Positives = 40/74 (54%)
 Frame = +2

Query: 119 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAK 298
           G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++          + KA  +A 
Sbjct: 35  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 92

Query: 299 LNEKWTESQWAQKL 340
           +  KW  S W +KL
Sbjct: 93  VKNKWENSSWGKKL 106


>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 29/74 (39%), Positives = 40/74 (54%)
 Frame = +2

Query: 119 GKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAK 298
           G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++          + KA  +A 
Sbjct: 22  GRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 79

Query: 299 LNEKWTESQWAQKL 340
           +  KW  S W +KL
Sbjct: 80  VKNKWENSSWGKKL 93


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 219 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 124
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>07_01_0835 - 6780994-6781677,6784173-6785969,6787362-6787595
          Length = 904

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 60  KRHDVLTTSLTTKQC 16
           K+HDV+TT++TT  C
Sbjct: 342 KKHDVVTTTITTPHC 356


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 146 IDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA--PTRLVRKAWTDAKL 301
           +DQ  AL D    G+PR   R+ ++  T FR+++ +            WTD +L
Sbjct: 513 VDQIWALYDDR-DGMPRYYARIRRIDTTNFRVQFTWLEHDAKNEEEDKWTDEEL 565


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 113 LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR 208
           L  ++V V  V D+   +VDG G G PR+  R
Sbjct: 254 LSREMVEVSTVCDRRDVVVDGGGGGGPRKITR 285


>04_04_0626 -
           26686411-26686518,26686876-26686953,26687763-26687810,
           26688012-26688167,26688725-26688795,26689949-26690055,
           26690145-26691112
          Length = 511

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 185 HCRVHQPVHEFGQ*RLPRSL 126
           H R  + +HE GQ RLP+SL
Sbjct: 15  HIRNRRQIHENGQIRLPKSL 34


>02_02_0378 + 9561775-9562947
          Length = 390

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 LVSVVDVIDQTRALVDGPGSGVP 193
           LV+ ++ +DQ  A VDG G G P
Sbjct: 271 LVAALNALDQLDAAVDGAGGGDP 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,419,608
Number of Sequences: 37544
Number of extensions: 187223
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)