Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_M01
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    66   7e-12
Z81515-10|CAH60782.1|  413|Caenorhabditis elegans Hypothetical p...    31   0.24 
U53343-1|AAA96219.2|  396|Caenorhabditis elegans Kinesin-like pr...    27   3.9  
AB024340-1|BAA96455.1|  396|Caenorhabditis elegans kinesin like ...    27   3.9  
Z92830-16|CAO82027.1|  197|Caenorhabditis elegans Hypothetical p...    26   9.1  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 66.1 bits (154), Expect = 7e-12
 Identities = 34/83 (40%), Positives = 49/83 (59%)
 Frame = +2

Query: 101 ADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRK 280
           A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF LK      T+ V+ 
Sbjct: 16  ASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVLKLRVGQRTKGVKA 75

Query: 281 AWTDAKLNEKWTESQWAQKLXNK 349
           A+  AK+ E + ++QWA+K+  +
Sbjct: 76  AFDAAKVTENFQKTQWAKKIAQR 98


>Z81515-10|CAH60782.1|  413|Caenorhabditis elegans Hypothetical
           protein F26H11.2g protein.
          Length = 413

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 180 PGPSTSARVWSITSTTLTNFPFKGPSAXXGRHXPGSTXPCKRHDVLTTSLTTKQCTLEK 4
           PG S+      I   T+   P + P++    H PGS  P   HD+   +L+ + CT +K
Sbjct: 73  PGTSSDKTTTPIKKITVFQKPVEPPASHVAFHTPGSATP---HDI---NLSIEHCTCQK 125


>U53343-1|AAA96219.2|  396|Caenorhabditis elegans Kinesin-like
           protein protein 13 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 219 SISQNSASNTRSQPLLVS*GKRGQMLNSMKNGQKVNGPRSXRTKKK 356
           SIS+NS+    +QP+ +  G+ G +   +K        +  R ++K
Sbjct: 303 SISRNSSLTRAAQPMPIDRGRGGSLFTQLKEQYMTLSDKQKRLREK 348


>AB024340-1|BAA96455.1|  396|Caenorhabditis elegans kinesin like
           protein KLP-13 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 219 SISQNSASNTRSQPLLVS*GKRGQMLNSMKNGQKVNGPRSXRTKKK 356
           SIS+NS+    +QP+ +  G+ G +   +K        +  R ++K
Sbjct: 303 SISRNSSLTRAAQPMPIDRGRGGSLFTQLKEQYMTLSDKQKRLREK 348


>Z92830-16|CAO82027.1|  197|Caenorhabditis elegans Hypothetical
           protein F11A5.17 protein.
          Length = 197

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 266 RLVRKAWTDAKL-NEKWTESQWAQK 337
           R + K W +++L NE W  S W+ K
Sbjct: 64  RWMDKYWNNSRLWNESWVSSHWSWK 88


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = -2

Query: 321 LSVHFSLSLASVHAFLTRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSIT 142
           L  H +L+   V A +    G V  Y  +  + + +++ +CC      GP+  A ++++ 
Sbjct: 333 LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAALQYFGPAVLALLFALL 390

Query: 141 STTLTNFPFKG 109
             T  N  + G
Sbjct: 391 LKTTGNLSWIG 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,962,469
Number of Sequences: 27780
Number of extensions: 156006
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)