Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_L20
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 119 3e-28
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 119 3e-28
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 31 0.19
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 27 1.7
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 3.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 5.3
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.3
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 7.0
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 9.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 9.2
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 119 bits (287), Expect = 3e-28
Identities = 57/81 (70%), Positives = 68/81 (83%)
Frame = +2
Query: 398 KLFTCLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 577
++ LT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ G
Sbjct: 97 EIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIG 156
Query: 578 AREAAFRNIKTIAECVAXELI 640
AREAAFRN+K+I+EC+A E+I
Sbjct: 157 AREAAFRNVKSISECLAEEII 177
Score = 115 bits (277), Expect = 5e-27
Identities = 61/111 (54%), Positives = 79/111 (71%)
Frame = +1
Query: 97 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 276
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 277 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLFNWRKP 429
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII L + P
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 119 bits (287), Expect = 3e-28
Identities = 57/81 (70%), Positives = 68/81 (83%)
Frame = +2
Query: 398 KLFTCLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 577
++ LT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ L+ G
Sbjct: 97 EIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIG 156
Query: 578 AREAAFRNIKTIAECVAXELI 640
AREAAFRN+K+I+EC+A E+I
Sbjct: 157 AREAAFRNVKSISECLAEEII 177
Score = 113 bits (271), Expect = 3e-26
Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +1
Query: 118 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 288
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 289 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLFNWRKP 429
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII L + P
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 389 MRLKLFTCLTGENPLQVLVTAIINSGPREDSTR 487
MR KLF + GE P +V V I+N+ E+S R
Sbjct: 363 MREKLFALIEGEMPSEVAVNMILNAEEVEESDR 395
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 438 TCRGFSPVKQVNNFKRMFDNTYGHQFFAIVPTVHH 334
T GF VKQ+N+F R +N F+ + P H
Sbjct: 494 TAHGFKIVKQINDFYRRLENK--SAFYMVCPLSAH 526
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 133 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 276
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 462 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 578
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 318 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLV*LEKTLCKY 440
PYK+ + + W + G+TY + + + L + +T Y
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRETASTY 178
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.3
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = -2
Query: 636 NSXATHSAI-VLIFLNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSR-GP 463
N H AI +LIF V K+ + L + V +P L G
Sbjct: 923 NDNLNHWAISLLIFQLYDPCLEVCKTAVKVLNEVCARNENLLAQVVQLQPSLAHLGEIGS 982
Query: 462 ELIMAVTSTCRGFSPVKQVNNFKRMFDNTYGHQ 364
L++ +T GF + ++N + DN Y H+
Sbjct: 983 PLLLRFLATTVGFHYLSEINFIEHELDNWYHHR 1015
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 295 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 134
L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 122 CLYHKPPTFLKSSFS 166
C H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 268 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 408
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,947
Number of Sequences: 5004
Number of extensions: 54491
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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