Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_L19
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   2.4  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   4.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   5.5  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    24   7.3  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    24   9.7  

>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 229 LKTYN*SV-FGGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQ 101
           LKT   S+ F GNF     P+LR V+G    +  + D   P  Q
Sbjct: 292 LKTVAGSIDFTGNFSSVELPKLRDVKGGLNIQTTSSDFTCPFRQ 335


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 178 APRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSG 50
           AP  +PV+   P  +P +  +        A  +   SLSQ+SG
Sbjct: 51  APAAQPVESSVPLPLPKRKSSVEKRAGSVASAVAAMSLSQNSG 93


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 374 DKTLYLQHLYEHPYDTFNL*TVTI 303
           DK++    LYE  ++ FNL T T+
Sbjct: 856 DKSITADRLYELQFEEFNLPTFTV 879


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +3

Query: 123 SLVGILVGAIPWTGLSLGA 179
           S V ILV  I WTGLS+GA
Sbjct: 77  SWVQILVAKI-WTGLSIGA 94


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -2

Query: 154 GIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRANYLPPTS 5
           GIA   IPT   +TPL+      T+T  S  Q S    PE   + +PP S
Sbjct: 37  GIAKVSIPTPKPSTPLS------TLTNGSTIQQSMTNQPEP-TSQVPPIS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,563
Number of Sequences: 5004
Number of extensions: 26366
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)