Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_L19
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959...    27   4.1  
06_01_0492 - 3531640-3531735,3531841-3531895,3532164-3532592,353...    27   5.4  
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637...    26   9.4  
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198...    26   9.4  

>07_03_1748 -
           29195037-29195427,29195552-29195679,29195810-29195938,
           29196334-29196412,29196508-29196671,29196754-29196936,
           29197021-29197146,29197237-29197328,29197412-29197508,
           29198013-29198339
          Length = 571

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 145 PTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETR--ANYLPPTS 5
           PT IP    ATP +Q     T TT +   SS   +P +   A  +PPT+
Sbjct: 57  PTPIPPARAATPSSQADDVPTTTTATSPPSSAPSSPPSSPPAESVPPTA 105


>06_01_0492 -
           3531640-3531735,3531841-3531895,3532164-3532592,
           3532677-3532756
          Length = 219

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 83  RHRSVNLIQWSCQIFGGNPCRSYSLDWPKSRGVILKK 193
           RHR   L+ W+  +    PCR ++   P+ R V++ +
Sbjct: 9   RHRQ--LLHWALDLHESAPCRCHTRRHPRPRDVLMPR 43


>03_02_0203 +
           6370729-6370850,6371213-6371391,6371516-6371625,
           6372721-6373575
          Length = 421

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 199 GNFFQNYAPRLRPVQGIAPTRIPTKDL-ATPLNQIH*AVTITTRSL 65
           G+F  +  PRLR ++ I P R+P   L A  L ++  A T  T+++
Sbjct: 290 GDFISSCCPRLRKLEIIDPMRLPQLVLRAEALEELIVASTRDTQTM 335


>01_01_0238 -
           1976645-1977561,1977649-1977909,1978243-1978275,
           1980556-1981345
          Length = 666

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 122 IFGGNPCRSYSLDWPKSRGVILK 190
           + GG   RS SLDWP   G+ ++
Sbjct: 432 LHGGAAARSSSLDWPTRLGIAVE 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,080,617
Number of Sequences: 37544
Number of extensions: 156715
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)