Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_L19
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    29   1.2  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    29   1.2  
Z68301-7|CAA92627.2|  364|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 202 GGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRAN 23
           G NFF++   ++RPV    P    T  L+T  N+     TI   S+++     A    ++
Sbjct: 434 GANFFKHPRKKIRPVVQTPPRIKATSRLSTESNKER---TIEMESVAEERTMEADSIGSS 490

Query: 22  YLPPT 8
           Y+ PT
Sbjct: 491 YISPT 495


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 202 GGNFFQNYAPRLRPVQGIAPTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETRAN 23
           G NFF++   ++RPV    P    T  L+T  N+     TI   S+++     A    ++
Sbjct: 434 GANFFKHPRKKIRPVVQTPPRIKATSRLSTESNKER---TIEMESVAEERTMEADSIGSS 490

Query: 22  YLPPT 8
           Y+ PT
Sbjct: 491 YISPT 495


>Z68301-7|CAA92627.2|  364|Caenorhabditis elegans Hypothetical
           protein W01B6.6 protein.
          Length = 364

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 116 CQIFGGNPCRSYSLDWPKSRGVILK 190
           C IF  NP +S + DWP +   ++K
Sbjct: 108 CSIFKNNPKKSRAPDWPIADNKLIK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,018,984
Number of Sequences: 27780
Number of extensions: 144487
Number of successful extensions: 274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)