Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_L14
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054868-1|AAH54868.1|  178|Homo sapiens nucleophosmin/nucleopla...    41   0.003
BC041067-1|AAH41067.1|  178|Homo sapiens nucleophosmin/nucleopla...    41   0.003
AY049737-1|AAL12172.1|  178|Homo sapiens nucleophosmin/nucleopla...    41   0.003
AF081280-1|AAC31609.1|  178|Homo sapiens nucleoplasmin-3 protein.      41   0.003
AF079325-1|AAD51496.1|  178|Homo sapiens nucleophosmin/nucleopla...    37   0.054
BC101478-1|AAI01479.1|  949|Homo sapiens zinc finger, CCHC domai...    31   2.7  
AL117532-1|CAB55981.1|  845|Homo sapiens hypothetical protein pr...    31   2.7  
AB030243-1|BAB83129.1|  949|Homo sapiens BDG-29 protein.               31   2.7  
AB011151-1|BAA25505.2|  910|Homo sapiens KIAA0579 protein protein.     31   2.7  
AK057442-1|BAB71488.1|  556|Homo sapiens protein ( Homo sapiens ...    31   4.7  

>BC054868-1|AAH54868.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin, 3 protein.
          Length = 178

 Score = 41.1 bits (92), Expect = 0.003
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +1

Query: 76  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 255
           +  D FF+G  LS   +S T+  E + +    + L +    L   AK DE NV++V A +
Sbjct: 32  VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88

Query: 256 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFG 375
              + + +PVA LK+     + LD      PVTF L  G G
Sbjct: 89  HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSG 129


>BC041067-1|AAH41067.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin, 3 protein.
          Length = 178

 Score = 41.1 bits (92), Expect = 0.003
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +1

Query: 76  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 255
           +  D FF+G  LS   +S T+  E + +    + L +    L   AK DE NV++V A +
Sbjct: 32  VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88

Query: 256 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFG 375
              + + +PVA LK+     + LD      PVTF L  G G
Sbjct: 89  HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSG 129


>AY049737-1|AAL12172.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin 3 protein.
          Length = 178

 Score = 41.1 bits (92), Expect = 0.003
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +1

Query: 76  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 255
           +  D FF+G  LS   +S T+  E + +    + L +    L   AK DE NV++V A +
Sbjct: 32  VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88

Query: 256 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFG 375
              + + +PVA LK+     + LD      PVTF L  G G
Sbjct: 89  HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSG 129


>AF081280-1|AAC31609.1|  178|Homo sapiens nucleoplasmin-3 protein.
          Length = 178

 Score = 41.1 bits (92), Expect = 0.003
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +1

Query: 76  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 255
           +  D FF+G  LS   +S T+  E + +    + L +    L   AK DE NV++V A +
Sbjct: 32  VTMDSFFFGCELSGHTRSFTFKVEEEDD--AEHVLALTMLCLTEGAK-DECNVVEVVARN 88

Query: 256 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFG 375
              + + +PVA LK+     + LD      PVTF L  G G
Sbjct: 89  HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSG 129


>AF079325-1|AAD51496.1|  178|Homo sapiens
           nucleophosmin/nucleoplasmin3 protein.
          Length = 178

 Score = 37.1 bits (82), Expect = 0.054
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = +1

Query: 76  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 255
           +  D FF+G  LS   +S T+  E + +    + L +    L   AK DE  V++V A +
Sbjct: 32  VTMDSFFFGCELSGHTRSFTFKVEEEDD--ADDVLALTMLCLTEGAK-DECIVVKVVARN 88

Query: 256 LQ-EAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGFG 375
              + + +PVA LK+     + LD      PVTF L  G G
Sbjct: 89  HDHQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSG 129


>BC101478-1|AAI01479.1|  949|Homo sapiens zinc finger, CCHC domain
           containing 14 protein.
          Length = 949

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +1

Query: 70  EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 249
           E++ +D     VT SSS  +E      +  YP  N   +   L GPDA   E N + +++
Sbjct: 119 EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 177

Query: 250 MSLQEAVKLPVAVLKVGESRHVR 318
             L+    LP  VLK   + HVR
Sbjct: 178 -GLRYLASLPSHVLK---NDHVR 196


>AL117532-1|CAB55981.1|  845|Homo sapiens hypothetical protein
           protein.
          Length = 845

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +1

Query: 70  EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 249
           E++ +D     VT SSS  +E      +  YP  N   +   L GPDA   E N + +++
Sbjct: 2   EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 60

Query: 250 MSLQEAVKLPVAVLKVGESRHVR 318
             L+    LP  VLK   + HVR
Sbjct: 61  -GLRYLASLPSHVLK---NDHVR 79


>AB030243-1|BAB83129.1|  949|Homo sapiens BDG-29 protein.
          Length = 949

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +1

Query: 70  EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 249
           E++ +D     VT SSS  +E      +  YP  N   +   L GPDA   E N + +++
Sbjct: 119 EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 177

Query: 250 MSLQEAVKLPVAVLKVGESRHVR 318
             L+    LP  VLK   + HVR
Sbjct: 178 -GLRYLASLPSHVLK---NDHVR 196


>AB011151-1|BAA25505.2|  910|Homo sapiens KIAA0579 protein protein.
          Length = 910

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +1

Query: 70  EIIMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 249
           E++ +D     VT SSS  +E      +  YP  N   +   L GPDA   E N + +++
Sbjct: 80  EVLWSDSSITSVTKSSSEVTEFISKLCQL-YPEENLEKLIPCLAGPDAFYVERNHVDLDS 138

Query: 250 MSLQEAVKLPVAVLKVGESRHVR 318
             L+    LP  VLK   + HVR
Sbjct: 139 -GLRYLASLPSHVLK---NDHVR 157


>AK057442-1|BAB71488.1|  556|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32880 fis, clone TESTI2004122. ).
          Length = 556

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 474 EMILSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTAWRP 614
           E +LS   K+ ++  PR K R  R M     H P+R PR E T  +P
Sbjct: 497 EQLLSEAGKVDREGTPR-KPRSHRSMGVRMEHSPQRPPRTEPTGSQP 542


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,762,230
Number of Sequences: 237096
Number of extensions: 1604794
Number of successful extensions: 3754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3722
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)