Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_L13
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 29 0.77
SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.77
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 27 2.3
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 2.3
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 27 3.1
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.1
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa... 26 4.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.4
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 5.4
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 7.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 7.2
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 287 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSLDNATYKPG 421
P++P P+EK + + ++ KA +S + +D ATYKPG
Sbjct: 156 PQVPVPSEKNQKVLRQIAD--------KAFESNMHIIDMATYKPG 192
>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 28.7 bits (61), Expect = 0.77
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 485 AKNEAYTPSGGAKKIVTNKLEWNAK---SKVGSLQNASYKPGGGDKKIETVKL 634
AK E+ PS G KK T KLE AK SK + NA P I + L
Sbjct: 70 AKKESEKPSDGEKKGKTEKLEKEAKSVYSKACNFVNAHKVPASAAISINLLSL 122
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 253 SIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI 381
SII + C + + +P K+ + + EC +K KS+EI
Sbjct: 61 SIINKFCTQCSDNDEFPTPKQIMETDVETLHECGFSKLKSQEI 103
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 283 NSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 375
+ RN Y D+K S+ E +SS+E +A++ S+
Sbjct: 39 SERNGYGDKKGSSSKEKTSSFEDELAEYASQ 69
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 353 PSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITP 475
P L A K K+G L + Y+ G KIE + E I P
Sbjct: 489 PEDVLSAYKDKVGDLASRGYRSLGVARKIEGQHWEIMGIMP 529
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 513 EELKRLSLINWSGTQNRKSVPSRTLLTSPAAVIR 614
E L ++++N+S T K+V TL + +AV+R
Sbjct: 264 ETLPVINIMNYSSTTGEKTVQVSTLAKAKSAVVR 297
>SPAC31G5.18c |||ubiquitin family, human C1ORF55
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 231 TVLGRAFLDHRARVQQPKLQ 290
TVL RA+L H++R+ P +Q
Sbjct: 41 TVLERAYLTHQSRIVHPDIQ 60
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 56 DSAVITVSARQSLIKY*ISEGDNDSGVDESTQG-NDLNGSPSSPNKKIVNKT 208
DSA +T + + E +D+ D +T+ ND+NG + N V+K+
Sbjct: 976 DSAQLTSEPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKS 1027
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 287 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSL 397
P T ++KV M VQVG+ S + +A KSK GS+
Sbjct: 774 PRCTQLTTQEKVDM-WVQVGDVKSASEEAAKSKSGSV 809
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 293 FLEFWLLHSCSMIEKGSP*DCYSIFLLLAFC 201
F E+ +H+C ++K S + S+FLL FC
Sbjct: 186 FFEWKTIHACPTVKKDSTLNPVSVFLL--FC 214
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 181 SEQENRKQNANKRKIE*QS*GEPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSS 342
S++ +KQ +K+K E S E S + +S + S E S+ E SSS
Sbjct: 67 SKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSS 120
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,791
Number of Sequences: 5004
Number of extensions: 53792
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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