Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_L13
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    30   1.4  
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    29   4.2  
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681...    28   5.6  
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295...    28   5.6  
06_01_0720 + 5248714-5248967,5250600-5251086                           27   9.8  
03_05_0955 + 29168771-29170507                                         27   9.8  

>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 244 EPFSIIEQECNSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSREI*DRI 393
           +PF ++E +  S  +RN +PD  + S  +  ++W+   +K  S ++ DRI
Sbjct: 228 QPF-VLELQLKSSPARNLFPDTNKASCSDDENNWKAKYSKSHSFKV-DRI 275


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 344 GNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFG 463
           GN PSP+ +  ++K  +  N  Y  G G     +  L  G
Sbjct: 756 GNTPSPSTQCYENKFATSTNGNYSIGNGDTLSSSNSLHAG 795


>10_06_0131 -
           11066033-11066251,11066548-11067012,11067102-11068177,
           11068269-11068422,11068511-11068601,11069016-11069152
          Length = 713

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +2

Query: 326 MNKVQVGNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAKNEAYT 505
           + K  +G +P+PNL   K K+    N +  P   +V +   K  FG +  + A +   Y 
Sbjct: 168 VGKRGIGKSPAPNL---KEKV----NDSKDPSAPEVDLPGAK--FGEVCVRFAPEPSGYL 218

Query: 506 PSGGAKKIVTNK 541
             G AK  + NK
Sbjct: 219 HIGHAKAALLNK 230


>09_04_0381 +
           17128437-17128655,17129250-17129331,17129409-17129564,
           17129646-17130431,17130743-17131094,17131467-17131548,
           17131756-17131833,17132041-17132055
          Length = 589

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 274 NSQNSRNSYPDRKEKSTDE*SSSWECTVAKFKSR 375
           +S+NS N   D K+K+ +  SSSWE T AK  S+
Sbjct: 500 SSKNSTNVI-DVKKKTVESKSSSWELTEAKSISK 532


>06_01_0720 + 5248714-5248967,5250600-5251086
          Length = 246

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 287 PEIPTPTEKKKVPMNKVQVGNAPSPNLKAVKSKIGSLDNATYKP 418
           PE+P+P ++K +  + V    + S  L  V     S  N+T  P
Sbjct: 114 PEVPSPKKRKGLLPSSVDKNKSQSKELSPVDDATSSPTNSTSSP 157


>03_05_0955 + 29168771-29170507
          Length = 578

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -1

Query: 513 PLGVYASFLAAILGVMFPNSSFLFSILTLPPPGLYVALSRDPILDFTAFK 364
           PL  YA   A +L   + +S + +S++ LPP  L +A  + P+L  +A++
Sbjct: 530 PLSNYARSQADLLLWNY-DSKYKYSLVELPPAFLSLAWEKRPLLTVSAWR 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,828,578
Number of Sequences: 37544
Number of extensions: 371632
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)