Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_L04
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 50 1e-07
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 33 0.016
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 1.4
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 2.4
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 2.4
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 3.1
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 4.2
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 25 5.5
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 7.3
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 24 9.6
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 24 9.6
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 24 9.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 24 9.6
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 50.4 bits (115), Expect = 1e-07
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Frame = +3
Query: 108 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 275
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 276 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLLPKKST 455
S+++SEL A + P + +++Q + A++ + D L ++T+L+ + T
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 33.5 bits (73), Expect = 0.016
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Frame = +3
Query: 3 LYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKV 182
LY++ N R L A+ V + + S D KFP K+P F ADG
Sbjct: 6 LYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADGFE 62
Query: 183 LLTESNAIAYYVA------NESLRGGDLATQARVWQWASWSDSELL-PASC-AWVFPYLG 338
L + Y+ E L + +A + +W + + +++ P + WV + G
Sbjct: 63 LSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWVGMFRG 122
Query: 339 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLLPKKST 455
+ + ++ + + + + +LK+ + + RT+L+ + T
Sbjct: 123 NIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDRFT 161
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 244 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 339
+W+P PV SG T+ C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 15 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 194
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 195 SN 200
SN
Sbjct: 612 SN 613
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 184 STFPSALSNAGTFPAGNFFKKSSDL 110
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 195 SNAIAYYVANESLRGGDLATQARVWQWAS 281
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 292 VNYCLLPVLGSSLTLVSCNSTNRML 366
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 247 WLPKPVSGSGHHGLTVNYCLLPV 315
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 235 AEEIWLPKPVSGSGHH 282
A +IWL PVSG H+
Sbjct: 101 AHQIWLSSPVSGPKHY 116
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = -2
Query: 210 KRWHCFQLGALFHRHFRMQALFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 31
K W G ++H+ ++ Q +R W QI + ++S N++R K
Sbjct: 523 KNWGDVSQGIIYHQ---LRKYLLQTNKARENIKFWRPQILLLINNPNRSENVIRFCNSLK 579
Query: 30 RGS 22
+GS
Sbjct: 580 KGS 582
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 9.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 225 ESLRGGDLATQA--RVWQWASWSDSELLPASCAWVFPYLG 338
+S+ G +L R QWASW+ L CA + LG
Sbjct: 15 QSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLG 54
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 52 HNIPGLM*K*HRISYLARPTSPKTS*RSFLPE 147
HNIP + +S + PT+P+ FLP+
Sbjct: 125 HNIPVRVLSQSYVSVIKEPTAPEPDCHIFLPQ 156
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 75 KVAPNFVFGETNKSEDFLK 131
K+ P+ F E + SEDFLK
Sbjct: 52 KLRPDNEFAEVHNSEDFLK 70
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 306 QAVVHCQTMMPT 271
Q V HC TMMPT
Sbjct: 1163 QMVFHCTTMMPT 1174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,086
Number of Sequences: 5004
Number of extensions: 42015
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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