Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_L03
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 233 PLLLTRIYFSRLAYELRSLYHILLMKAVRLNV 138
           PL+   +++SRL   +R+   +L  +A ++NV
Sbjct: 232 PLIFIILFYSRLLSSIRNHEKMLREQAKKMNV 263


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 435 YEPSNVNKYDESSPTTGTDFFSRLVVEWEKAAQVDPPVR 551
           Y P+ V K  +      +D +S+L   W K   +D  VR
Sbjct: 7   YRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVR 45


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 233 PLLLTRIYFSRLAYELRSLYHILLMKAVRLNV 138
           PL+   +++SRL   +R+   +L  +A ++NV
Sbjct: 232 PLIFIILFYSRLLSSIRNHEKMLREQAKKMNV 263


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -1

Query: 285 CCPAQLTTAEVSFGKPEASIVDQ 217
           C P Q T +++ + KP+ ++V++
Sbjct: 25  CQPTQRTMSKIQWRKPKPAMVEE 47


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 648 PMVLRNPKKRVKTCSLSYHPIY 583
           P+VL + K+   TC+L   P Y
Sbjct: 171 PVVLDDSKEEHPTCALDLTPTY 192


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 645 MVLRNPKKRVKTCSLSYHP 589
           +++R  + + KTC   YHP
Sbjct: 376 VLMRTVRGKEKTCYYPYHP 394


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 645 MVLRNPKKRVKTCSLSYHP 589
           +++R  + + KTC   YHP
Sbjct: 376 VLMRTVRGKEKTCYYPYHP 394


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 389 SFVYSGSQGFSCVDT*ILYILFEXLVSRT 303
           S + + S   SCV   +L++LF  L +RT
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLFSFLRTRT 33


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 389 SFVYSGSQGFSCVDT*ILYILFEXLVSRT 303
           S + + S   SCV   +L++LF  L +RT
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLFSFLRTRT 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,159
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)