Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_L02
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 230 2e-61
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 37 0.003
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 35 0.012
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.77
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.0
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 27 1.8
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 2.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.1
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.4
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac... 25 7.2
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.5
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.5
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.5
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 9.5
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.5
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 230 bits (562), Expect = 2e-61
Identities = 111/145 (76%), Positives = 121/145 (83%)
Frame = +3
Query: 216 LDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLG 395
LD+++LS + P +ISRQATINIGTIGHVAHGKSTVVKAISGV TVRFKNELERNITIKLG
Sbjct: 5 LDISELSPIHPAIISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLG 64
Query: 396 YANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTGRFQLVRHVSFVXCPGHDILM 575
YANAKIY+C N +CPRP + S S+K+D PC C LVRHVSFV CPGHDILM
Sbjct: 65 YANAKIYKCSNEECPRPGCYRSYSSNKEDHPPC--EICNSPMNLVRHVSFVDCPGHDILM 122
Query: 576 ATMLNGAAVMDAXLLLIAGNESCPQ 650
ATMLNGAAVMDA LLLIAGNESCPQ
Sbjct: 123 ATMLNGAAVMDAALLLIAGNESCPQ 147
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNE 638
RH + V CPGH + M+ GAA MD +++++ +
Sbjct: 116 RHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATD 151
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 255 ISRQATINIGTIGHVAHGKSTVVKAIS 335
+ ++ +NIGTIGHV HGK+T+ AI+
Sbjct: 48 VRKKPHVNIGTIGHVDHGKTTLTAAIT 74
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 34.7 bits (76), Expect = 0.012
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 180 TQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGT-IGHVAHGKSTVVKAISGVQTVRF 356
T +++H Q L++ ++ K SA++ S ++ I A+GK+ ++ A Q + +
Sbjct: 825 TMTDVHDQKLAERELQKQSAIAANENSYRSLAEASPQIVFAANGKNGIIYA--NAQWLSY 882
Query: 357 KNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDS 485
L ++ LG+ +A +Y D KC P S +++D+S
Sbjct: 883 SG-LSLESSLGLGFLSA-VYHADRKKCLLPESLEGTFNNQDES 923
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNE 638
+ ++F+ PGH A GA + D +L++AG++
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDD 255
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIA 629
R S + PGH + M+NGA+ D +L+I+
Sbjct: 316 RRFSLLDAPGHKGYVTNMINGASQADIGVLVIS 348
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 291 GHVAHGKSTVVKAISGVQT 347
GH++HG ST KAIS V T
Sbjct: 139 GHLSHGFSTPQKAISAVST 157
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 447 TSFISGGSSKDDSFPCLRPACTGRFQ 524
+ FI G + DD CL P C GR +
Sbjct: 18 SGFIKAGFAGDDIPKCLFPTCVGRIK 43
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 333 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPA 506
S QT + L + + +++A + P+PT F SGG SK F PA
Sbjct: 207 SNTQTANTTSNLR--VPVNASWSDAGRKEKSQENKPKPTPFGSGGPSKPTPFESHGPA 262
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +3
Query: 300 AHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKD 479
A G V+ S Q F +E+ T+KL Y N + + P PR T S D
Sbjct: 396 ARGWCNVLDDESSQQNQNFSSEIGIFQTVKLWYLNESKFDTNPP--PRSTMSCRKLSGID 453
Query: 480 DSF 488
D F
Sbjct: 454 DPF 456
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 240 LSPEVISRQATINIGTIGHVAHGKSTVVKAIS-GVQTVRFKNELERNITIKL 392
L P ++S++ T+N ++ H VVK + GV V++ L + +TI++
Sbjct: 2568 LYPSILSQEDTMNDNSLLPTFHSMVAVVKNDTYGVTYVKYATILLQELTIEI 2619
>SPBC1539.09c |trp1||anthranilate synthase component
II|Schizosaccharomyces pombe|chr 2|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 189 NLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 332
NLH ++ +KL+ + P+ + A I + VAH S V A+
Sbjct: 452 NLHSFEVDLSTTSKLAEMVPDDVILAALSGISSPADVAHYSSQGVSAV 499
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 276 NIGTIGHVAHGKSTVVKAI 332
N+ I HV HGKST+ ++
Sbjct: 21 NMSVIAHVDHGKSTLTDSL 39
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 289 IVPMLIVACLDMTSGERADNFVTSNLD 209
++ +L + C D GE+ D TSN+D
Sbjct: 1137 VLDVLELVCYDWDMGEKPDVLGTSNID 1163
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 276 NIGTIGHVAHGKSTVVKAI 332
N+ I HV HGKST+ ++
Sbjct: 21 NMSVIAHVDHGKSTLTDSL 39
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 394 PNLIVIFLSNSFLNLTVCTPEIA 326
P+LI++ ++ F L +CTP +A
Sbjct: 8 PSLILLVIAIVFFVLAICTPPLA 30
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 282 GTIGHVAHGKSTVVKAISGVQTVRF 356
G +GH GKST+++AI + F
Sbjct: 474 GVVGHNGCGKSTLLRAIGDYKVENF 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,134
Number of Sequences: 5004
Number of extensions: 49876
Number of successful extensions: 135
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -