Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_L02
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 244 4e-65
02_04_0462 + 23131433-23132836 38 0.005
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 36 0.028
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 32 0.46
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314... 30 1.4
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840... 30 1.8
09_06_0094 - 20831530-20831997 29 4.2
12_02_1141 + 26415235-26415858 28 7.4
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 27 9.8
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 27 9.8
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 244 bits (598), Expect = 4e-65
Identities = 121/154 (78%), Positives = 131/154 (85%), Gaps = 1/154 (0%)
Frame = +3
Query: 192 LHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 371
L +QDLSKLDVTKL LSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE
Sbjct: 34 LMKQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELE 93
Query: 372 RNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACTG-RFQLVRHVSFV 548
RNITIKLGYANAKIY+C++ KCPRP + + GS K+DS C P R +L+RHVSFV
Sbjct: 94 RNITIKLGYANAKIYKCEDEKCPRPMCYKAYGSGKEDSPHCDVPGFENTRMKLLRHVSFV 153
Query: 549 XCPGHDILMATMLNGAAVMDAXLLLIAGNESCPQ 650
CPGHDILMATMLNGAA+MD LLLIA NESCPQ
Sbjct: 154 DCPGHDILMATMLNGAAIMDGALLLIAANESCPQ 187
>02_04_0462 + 23131433-23132836
Length = 467
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAG 632
RH + V CPGH + M+ GAA MD +L+++G
Sbjct: 133 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSG 166
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGV 341
+NIGTIGHV HGK+T+ A++ V
Sbjct: 71 VNIGTIGHVDHGKTTLTAALTMV 93
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGV 341
+N+GTIGHV HGK+T+ AI+ V
Sbjct: 68 VNVGTIGHVDHGKTTLTAAITKV 90
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIA 629
RH + V CPGH + M+ GAA MD +L+++
Sbjct: 130 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVS 162
>05_06_0005 +
24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 ISRQATINIGTIGHVAHGKSTVVKAI-SGVQTVRFKNELERNITIKLGYANAKIYQCDNP 431
+ + +T+ + GH GK VVK + G+ + ++E E + G+ A+ C+N
Sbjct: 536 VPKSSTVTVLRTGHDGEGKQGVVKHLYMGILFIHNESESENS-----GFFCAQCSSCENV 590
Query: 432 KCPRPTSFISGGSSKDDSFP 491
K + + + G+S D+ P
Sbjct: 591 KKRKELASFTFGNSDDNPIP 610
>02_01_0432 -
3144560-3144655,3144792-3144832,3145019-3145094,
3145465-3145542,3146121-3146208,3146613-3146686,
3147445-3147579,3147699-3147770,3148239-3148325,
3148418-3148522,3149028-3149085,3149576-3149634,
3149960-3150056,3150217-3150317,3150443-3150487,
3150619-3150681,3151082-3151147,3151286-3151342,
3151570-3151656,3152063-3152239,3152413-3152625
Length = 624
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Frame = +3
Query: 276 NIGTIGHVAHGKSTVV-KAISGVQTVRFKN-----------ELERNITIKLGYANAKIYQ 419
N I H+ HGKST+ K + TV+ + E ER ITIKL A +
Sbjct: 79 NFSIIAHIDHGKSTLADKLLELTGTVQKREMKQQFLDNMDLERERGITIKLQAARMRYIM 138
Query: 420 CDNPKC 437
D P C
Sbjct: 139 NDEPYC 144
>09_04_0730 +
19783346-19783372,19783548-19783638,19783973-19784051,
19784410-19784743,19784934-19785968,19786141-19786290,
19786781-19787215
Length = 716
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 537 VSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNE 638
++F+ PGH A GAAV D +L++A ++
Sbjct: 247 ITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADD 280
>09_06_0094 - 20831530-20831997
Length = 155
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 518 LPTSSPRELCXLPWSRHP 571
+PT+ P L LPW RHP
Sbjct: 1 MPTAPPPVLLHLPWQRHP 18
>12_02_1141 + 26415235-26415858
Length = 207
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 171 GRTTQSNLHQQDLSKLDVTKLSALSP 248
G T + H QDLS+ +V K+S L P
Sbjct: 80 GETYYTRYHDQDLSEFNVDKVSPLPP 105
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/68 (20%), Positives = 31/68 (45%)
Frame = +3
Query: 129 KYNRSNTTIMASNEGRTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHG 308
K + +T + R + + + KLD + P+ +SR++T +G + H A G
Sbjct: 674 KRSMDASTEKLEDPDRDLEDTMKTRKRKKLDTLGDLSSQPQPVSRKSTTKVGELMHKAAG 733
Query: 309 KSTVVKAI 332
+ + + +
Sbjct: 734 QMSQTRPV 741
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +3
Query: 141 SNTTIMASNEGRTTQSNLHQQDLSKLDVTKLSALSPEV-----ISRQATINIGTIGHVAH 305
S+ +++A+ R + + + LD SP +R+ NI + HV H
Sbjct: 71 SSVSVVAAGRSRRRSARSSLRASASLDQEVKERASPAAGKSGQATRRDVRNIAIVAHVDH 130
Query: 306 GKSTVVKAI 332
GK+T+V ++
Sbjct: 131 GKTTLVDSM 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,317
Number of Sequences: 37544
Number of extensions: 322419
Number of successful extensions: 694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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