Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_L02
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 240 5e-64
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 43 2e-04
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 43 2e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 36 0.025
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 36 0.025
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 36 0.025
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 27 8.7
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 240 bits (588), Expect = 5e-64
Identities = 119/166 (71%), Positives = 129/166 (77%), Gaps = 1/166 (0%)
Frame = +3
Query: 156 MASN-EGRTTQSNLHQQDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTVVKAI 332
MAS E QS L +QDL K+ V L+ L+ EVISRQATINIGTIGHVAHGKST+VKA
Sbjct: 1 MASEAEKDKCQSWLAKQDLDKVGVDNLNPLTEEVISRQATINIGTIGHVAHGKSTLVKAF 60
Query: 333 SGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDDSFPCLRPACT 512
SGV TV+FK ELERNITIKLGYANAKIY+C N +CPRP + S GSS D FPC R C
Sbjct: 61 SGVHTVKFKRELERNITIKLGYANAKIYRCSNQECPRPGCYRSAGSSTPDRFPCERAGCG 120
Query: 513 GRFQLVRHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNESCPQ 650
G F VRHVSFV CPGHDILMATMLNGAAVMDA LL+AGNE CPQ
Sbjct: 121 GEFTCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEPCPQ 166
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/122 (29%), Positives = 53/122 (43%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 452
+N+GTIGH+ HGK+T+ AI+ VQ K G+ AK + D
Sbjct: 46 VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGF--AKHIKFDE-------- 82
Query: 453 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAG 632
I G + + A G +R S CPGH + M+ G + MD +L+IA
Sbjct: 83 -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
Query: 633 NE 638
+
Sbjct: 142 TD 143
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/122 (29%), Positives = 53/122 (43%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTS 452
+N+GTIGH+ HGK+T+ AI+ VQ K G+ AK + D
Sbjct: 46 VNVGTIGHIDHGKTTLTSAITRVQA-------------KKGF--AKHIKFDE-------- 82
Query: 453 FISGGSSKDDSFPCLRPACTGRFQLVRHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAG 632
I G + + A G +R S CPGH + M+ G + MD +L+IA
Sbjct: 83 -IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAA 141
Query: 633 NE 638
+
Sbjct: 142 TD 143
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNE 638
RH + + CPGH + M+ GAA M+ +L++A +
Sbjct: 112 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 147
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGV 341
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 50 LNVGTIGHVDHGKTTLTSAITKI 72
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNE 638
RH + + CPGH + M+ GAA M+ +L++A +
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 148
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGV 341
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKI 73
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 35.9 bits (79), Expect = 0.025
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLIAGNE 638
RH + + CPGH + M+ GAA M+ +L++A +
Sbjct: 113 RHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATD 148
Score = 35.5 bits (78), Expect = 0.033
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 273 INIGTIGHVAHGKSTVVKAISGV 341
+N+GTIGHV HGK+T+ AI+ +
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKI 73
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 30.7 bits (66), Expect = 0.94
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 8/168 (4%)
Frame = +3
Query: 147 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTV- 320
T S+E T +Q Q+++K P V + IN+ +GHV GKST+
Sbjct: 129 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 187
Query: 321 ------VKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 482
++ + +FK+E RN K +A A + + R + G +S +
Sbjct: 188 GHLLHDLEVVDSRTIDKFKHEAARN--GKASFAYAWVLDETEEERERGVTMDIGRTSFET 245
Query: 483 SFPCLRPACTGRFQLVRHVSFVXCPGHDILMATMLNGAAVMDAXLLLI 626
S R + + PGH ++ M+ G + DA +L++
Sbjct: 246 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVV 279
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 30.7 bits (66), Expect = 0.94
Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 8/168 (4%)
Frame = +3
Query: 147 TTIMASNEGRTTQSNLHQ-QDLSKLDVTKLSALSPEVISRQATINIGTIGHVAHGKSTV- 320
T S+E T +Q Q+++K P V + IN+ +GHV GKST+
Sbjct: 147 TVSRPSSEVDLTSFRRNQLQNIAKAPSVARKTPKPRVADKDL-INLIVVGHVDAGKSTLM 205
Query: 321 ------VKAISGVQTVRFKNELERNITIKLGYANAKIYQCDNPKCPRPTSFISGGSSKDD 482
++ + +FK+E RN K +A A + + R + G +S +
Sbjct: 206 GHLLHDLEVVDSRTIDKFKHEAARN--GKASFAYAWVLDETEEERERGVTMDIGRTSFET 263
Query: 483 SFPCLRPACTGRFQLVRHVSFVXCPGHDILMATMLNGAAVMDAXLLLI 626
S R + + PGH ++ M+ G + DA +L++
Sbjct: 264 SH--------------RRIVLLDAPGHKDFISNMITGTSQADAAILVV 297
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 246 PEVISRQATINIGTIGHVAHGKSTVVKAIS 335
P S +N+G +GHV GK+T+ + I+
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 531 RHVSFVXCPGHDILMATMLNGAAVMDAXLLLI 626
R ++ + CPGH L+ +L + V D +++I
Sbjct: 72 RRLALIDCPGHSGLIRAVLAASTVFDMAIVII 103
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 246 PEVISRQATINIGTIGHVAHGKSTVVKAIS 335
P S +N+G +GHV GK+T+ + I+
Sbjct: 5 PSTSSSVGPLNLGILGHVDSGKTTLTRRIA 34
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 243 SPEVISRQATINIGTIGHVAHGKSTVVKAISGVQ 344
SP+ + R+ I + +GHV HGK+T++ A+ Q
Sbjct: 148 SPKDLERRPPI-VTIMGHVDHGKTTLLDAMRNSQ 180
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 432 KCPRPTSFISGGSSKDDSFPCLRPACTGR 518
K P+SF+S GSS + P ++P T R
Sbjct: 240 KVSSPSSFLSPGSSTSSTVPNVKPTVTRR 268
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,958
Number of Sequences: 27780
Number of extensions: 281661
Number of successful extensions: 659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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