Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K13
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   4.2  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   4.2  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    24   5.5  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    24   5.5  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 101 PTPELQEELKKIAQAIVAPAKGILAADESTGYNGK 205
           P PE ++E  K+A++   P K   +A ES     K
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSK 511


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 196 QWESVCRTSAXGEHRGEPSSLSPTPIQL*RCALREHLWC 312
           QW+SV R+    +  G P S+ P  ++       ++L C
Sbjct: 450 QWKSVMRSELSQQLSGNPESVPPGLMEYLLAVANDNLKC 488


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 211 KRFPIVXGGFVSGEDTLCG 155
           K +  +  GF SGED +CG
Sbjct: 400 KIWEAIQPGFTSGEDLICG 418


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 272 IGVGDNDDGSPLCSPXADVLQTLSHCXRWIRQR 174
           +G  +N    PLC   +D+++ +     W+ Q+
Sbjct: 445 VGTKENPMVIPLCGKTSDIIEPVMKPQWWVNQK 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,342
Number of Sequences: 5004
Number of extensions: 18368
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)