Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K13
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   7.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   9.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.4  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 318 RITPEMFSE 292
           RITPE++SE
Sbjct: 250 RITPELYSE 258


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 330 FSWNRITPE 304
           F WNR  PE
Sbjct: 188 FGWNRYVPE 196


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -1

Query: 330 FSWNRITPE 304
           F WNR  PE
Sbjct: 64  FGWNRYVPE 72


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 SPLTNPPXTMGKRLQDIGXGRTQRRT 248
           +P+T  P T+ + L+     R +RRT
Sbjct: 158 TPVTPTPTTVQQLLRRAQIRRNERRT 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,004
Number of Sequences: 438
Number of extensions: 1445
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)