Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K10
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         35   0.007
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   3.3  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   4.3  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   5.7  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   7.5  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   10.0 
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    25   10.0 
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   10.0 

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
 Frame = +1

Query: 88  VMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDS--LEDEGEVVSD 261
           +  K   G + K      T  D  AQ  +++ L   +PN  I+GEEDS  L +  +  S 
Sbjct: 29  IKEKSAAGALTKDDKSPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLRENTQTCSR 88

Query: 262 -W-LVNEI------DKEILKLQCPPNLQEVKEEDIV-------VW-VDPLDGTSEYTQGF 393
            W LV E        KE+ +++    +  + ++          +W +DP+DGT  + +G 
Sbjct: 89  VWELVQETIQHATEYKELGQIKSAEEMMSIIDQGSYHGGRNGRMWTLDPIDGTKGFLRG- 147

Query: 394 LEHVTVLIGIAVNETPVAGVIHQP 465
                + + +  N  PV   I  P
Sbjct: 148 -AQYAICLALIENGKPVVSAIGCP 170


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 258 THNFTLILQTIFF--TYYF*VRILSCK*CNNTALSRPICFCLIVVFTLFHYTKFPFAHYI 85
           TH FT  ++TIFF  T  F  ++ S     N  +S    F L +V  L  +T+  F  ++
Sbjct: 137 THTFTNSIETIFFFLTILFLSKLNSVP--LNKKISYLYTFLLAIVSVLGFFTRITFLAFV 194


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 211 IIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKE-EDIVVWVDPLDGTSEYT 384
           II   DS+ +  EV+     + IDK+I KLQ   N+  V E E I+ +V  L  +S YT
Sbjct: 275 IITALDSVSNSQEVLL-LSTDSIDKKIAKLQNSTNIFYVPEHEPILAFVHQL--SSSYT 330


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 43  SSVSVANRAGKIVRDVMSKGEL 108
           S +++ NR GK+ + + SKG++
Sbjct: 235 SKIAIINREGKLTQSLQSKGDV 256


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 316 LQEVKEEDIVVWVDPLDGTSEYTQGFLEH 402
           L++ KE+    W++ +D +  +  GF E+
Sbjct: 507 LEQNKEQYEKTWIETIDSSGNHVSGFYEN 535


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 175 VASLAAQYPNLKIIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQE 324
           +ASL    P L ++  +D   D+G         EI+ + +    PP LQE
Sbjct: 368 IASLKLHNPRLVLVQNKDMEVDDG--------GEIEDDAIVFSVPPTLQE 409


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 142 TEADRSAQRCIVASLAAQYPNLKIIGEE 225
           T    S QR I A L   YPNLK + +E
Sbjct: 18  TPIKSSIQRGIKAKLVQAYPNLKQVIDE 45


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 265 LVNEIDKEILKLQCPPNLQEVKEEDIVVW--VDPLDGTSE 378
           ++NE D EI+K +    L+  KEE+  +W  ++ L+ T +
Sbjct: 341 VINERDAEIIKKE--EELEAAKEEEEEIWRNMEQLEDTED 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,375
Number of Sequences: 5004
Number of extensions: 42035
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)