Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K05
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794...   188   2e-48
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449...   174   5e-44
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    27   7.6  
03_06_0683 - 35522534-35522647,35523009-35523143,35523224-355233...    27   7.6  

>03_06_0314 -
           33077621-33077869,33078218-33078280,33079392-33079449,
           33079534-33079688,33079797-33080106,33080634-33080890,
           33081280-33081359,33083888-33083948
          Length = 410

 Score =  188 bits (459), Expect = 2e-48
 Identities = 100/160 (62%), Positives = 112/160 (70%), Gaps = 21/160 (13%)
 Frame = +1

Query: 61  RKSVFSGSSLTGVVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA--- 231
           +K  F   S  GV DLD LLDM  + L++L           GLKRKPMAL+KKLR+A   
Sbjct: 252 KKRTFRKYSYRGV-DLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSN 310

Query: 232 ------------------KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQV 357
                             KK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQV
Sbjct: 311 FEGTVFRLGFYEAGSYFVKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQV 370

Query: 358 EIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 477
           EIKPEMIGHYL EFS++YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 371 EIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 410


>07_01_0604 -
           4491884-4491993,4493030-4493225,4494269-4494326,
           4494459-4494613,4495092-4495115,4495377-4495489,
           4499943-4500129
          Length = 280

 Score =  174 bits (423), Expect = 5e-44
 Identities = 85/132 (64%), Positives = 99/132 (75%)
 Frame = +1

Query: 31  ETWLRSTKPSRKSVFSGSSLTGVVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMAL 210
           ET + +    +K  F   S  GV DLD LLDM  + L++L           GLKRKPMAL
Sbjct: 114 ETEVAAGAQPKKRTFRKYSYRGV-DLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMAL 172

Query: 211 VKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYL 390
           +KKLR+AKK+AP  EKPE V+THLRNMIIVPEM+GSIVG+YNGKTFNQVEIKPEMIGHYL
Sbjct: 173 IKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYL 232

Query: 391 GEFSVTYKPVKH 426
            EFS++YKPVKH
Sbjct: 233 AEFSISYKPVKH 244


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 300 NDDHVSQVSLHDLWLLIRRSLFLGATQLLDQCHWFT 193
           +DD+V+ VSL+ L  L    ++L    L  +CH+FT
Sbjct: 655 DDDNVTPVSLNKLVSLTIAEIWLYGCLLRFRCHFFT 690


>03_06_0683 -
           35522534-35522647,35523009-35523143,35523224-35523346,
           35523640-35523741,35523884-35524090,35524634-35524748,
           35524839-35525048,35525135-35525234,35525448-35525609,
           35525737-35526073,35526472-35526678,35527284-35527736
          Length = 754

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 16  LSNKQETWLRSTKPSRKSVFSGSSLTGVVDLDQLLDMPNEQLMELMH 156
           L ++  TWL S   +RK+   GSS     D +  L +P E  + +MH
Sbjct: 487 LISRYTTWLSSGLAARKASDGGSS--SPADAEWALSVPVEDFIYVMH 531


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,479,498
Number of Sequences: 37544
Number of extensions: 249690
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)