Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_K02
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283... 33 0.13
07_03_0051 - 12831167-12832188,12832245-12832512 31 0.39
07_03_0652 + 20295171-20295812 29 2.1
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 28 2.8
01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883 27 4.9
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 27 6.4
01_03_0281 - 14570635-14574633 27 6.4
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936... 27 8.5
09_01_0091 + 1298829-1298898,1299461-1299535,1299642-1299799,130... 27 8.5
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 27 8.5
>04_04_1572 -
34527730-34527859,34528077-34528136,34528253-34528375,
34528506-34528960,34529343-34529876,34530638-34531501
Length = 721
Score = 32.7 bits (71), Expect = 0.13
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 254 YVFSSIVEYILILTLMFAFSAILYVIYKS-YISPVFYKKELTEVGFXHIPQGSRTRGGG 427
++ + + Y+L+L + +S LYV Y S Y+ + ++ VGF H+ G G
Sbjct: 224 FIINLLPLYVLVLLVTGRYSQRLYVAYNSTYVLGMLLAMQIRFVGFQHVQSGEHMAAMG 282
>07_03_0051 - 12831167-12832188,12832245-12832512
Length = 429
Score = 31.1 bits (67), Expect = 0.39
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 143 ITEAVSSNTACPDTGPKAETTNFFLLLQKNITIESSKYVFSSIVEYIL-ILTLMFAFSAI 319
+ + NT C D K + T + N+ I S KY++S+I+E T+ + +
Sbjct: 43 VVDGFMRNTNCDDPELKEKLTRLCTVPDPNLIICSYKYIYSTIIELACKTTTVKTRYVVM 102
Query: 320 LYVIYKSY 343
I KSY
Sbjct: 103 SEEILKSY 110
>07_03_0652 + 20295171-20295812
Length = 213
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 85 IVVSNSNKQ--NGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKL 210
+VV+N + G S S+ +HG R+ VPR E+R+ +L
Sbjct: 71 VVVTNPSNSAYRYGESLASVTYHGERVGASVVPRGEVEARSTRL 114
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 21 LKEADVYNTQKKKQ*LIRIERDCCLKFKQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQK 200
L + + + KK L+ IERD L+F Q + + S+KP T + Q+
Sbjct: 313 LMQTKIEDFVKKMSDLLHIERDAELEFTQEELNATPVMDGNSKKPLKPVEYLVTHGQSQQ 372
Query: 201 QQ 206
+Q
Sbjct: 373 EQ 374
>01_05_0202 + 19238425-19239272,19239356-19239586,19239688-19239883
Length = 424
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 155 VSSNTACPDTGPKAETTNFFLLLQKNITIESSKYVFSSIVEYILILTLMFAFSAILYVIY 334
VSS T C + + T + +I KY+ ++ Y++I+ + + +Y+ +
Sbjct: 46 VSSVTVCKQSQLEEATPQTPSMNSIDIKKRCLKYLVFVVLAYMIIILVTGSLLVFMYIAH 105
Query: 335 KSYISPVFYKKELTEVGF-XHIPQGSRTRGG 424
S V +K + + F + S T GG
Sbjct: 106 VSSARDVLTRKSINKALFSISVTVSSFTNGG 136
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = -1
Query: 136 WKMLTIRHFV--CLNLRQQSRSIRINYCFFFCVLY-TSASFNTK 14
W+M T H + L L + CFF+C L+ F+TK
Sbjct: 526 WEMETSNHDIMPALQLSYDYLPFHLQQCFFYCALFPEDYKFDTK 569
>01_03_0281 - 14570635-14574633
Length = 1332
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 380 LLSVPFYRKQD*YMTCI*HTKSRRTQTLRLVLKYIQRSN*IRILMTQSLYSFGVT 216
LL+ P Y K+ +C R Q +++ KY++R+N + I + S S +T
Sbjct: 1168 LLNFPLYLKEIHIWSCPELRSIRGKQDIKVESKYVERNNGMAISESSSDLSASIT 1222
>11_04_0370 +
16891334-16891469,16891556-16891707,16893277-16893639,
16893832-16893929,16893983-16896029
Length = 931
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 294 VSIKIYSTIELNTYFDDSIVIFFWSN 217
VS+ +Y +TYFD+SIV++ W +
Sbjct: 342 VSLSLYLK---DTYFDESIVVWLWKS 364
>09_01_0091 +
1298829-1298898,1299461-1299535,1299642-1299799,
1300629-1300979
Length = 217
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 159 LRTRRAPTPDRKQKQQ 206
LRTRR PTPD QQ
Sbjct: 192 LRTRRVPTPDNHADQQ 207
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 126 NIFHPPSRKPSLRTRRAPTPDR 191
N HPPS+ P R AP P R
Sbjct: 45 NAAHPPSQAPGPAARHAPGPAR 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,241,858
Number of Sequences: 37544
Number of extensions: 204757
Number of successful extensions: 575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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