Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K02
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038622-1|AAB94152.1|  358|Caenorhabditis elegans Hypothetical ...    31   0.35 
U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine rece...    28   3.3  
AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical ...    27   4.3  
AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain p...    27   4.3  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   4.3  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical...    27   7.5  
AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical...    27   7.5  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z50796-3|CAA90667.1|  184|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical p...    26   10.0 
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    26   10.0 
AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type tra...    26   10.0 
AF179358-1|AAF13868.1|  184|Caenorhabditis elegans cyclin-depend...    26   10.0 
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    26   10.0 
AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    26   10.0 
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AF038622-1|AAB94152.1|  358|Caenorhabditis elegans Hypothetical
           protein R07C12.3 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.35
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 345 IYDLYITYKIAENANIKVSIKIYSTIELNTYFDDSIVIFFWSNRKKFVVSAF 190
           IY++ + Y  ++N+ IK+ I++Y+ I +   F +  V     NR+K  V  F
Sbjct: 308 IYNMTLDYSYSDNSPIKIQIRLYTWI-IRRIFAEFAVCCSAVNRRKSTVVVF 358


>U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine
           receptor, class m protein2 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 206 NFFLLLQKNITIESSKYVFSSIVEYILILTLMFAFSAILYVIYKSYISPVF 358
           N +  ++K +  +++K     I   IL+L  +F F  I    Y+S+I P+F
Sbjct: 221 NIYKQMKKKMLSDAAKKSQQQI-NLILLLQFLFPFLLIHIPFYESFIFPIF 270


>AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical
           protein C27A12.9 protein.
          Length = 883

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 257 VFSSIVEYILILTLMFAFSAILYVIYKSYISPVFYKKE 370
           +F+    +  ILT++F FSA  ++IY+ +    F   E
Sbjct: 839 IFAPKFIFECILTIVFIFSANFFLIYRQFFGEKFKNSE 876


>Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC455.3 protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 348 LIYDLYITYKIAENANIKVSIKIYSTIELNTYFDDSIVIFFW 223
           +IYD Y   KI +N NI+V        E     + S+  FFW
Sbjct: 53  IIYDYYAHKKIVKNPNIEVINYEVDEEEKAAASEASVFKFFW 94


>AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical
           protein Y75B8A.1 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 102 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 209
           KQ +W +    H   R+  +  +     D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261


>AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain
           protein PHP-3 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 102 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 209
           KQ +W +    H   R+  +  +     D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 144 SRKPSLRTRRAPTPDRKQK 200
           SR P  RTRR+P+P R+++
Sbjct: 104 SRSPPRRTRRSPSPPRRRR 122


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
 Frame = -2

Query: 330 ITYKIAE---NANIKVSI--KIYSTIELNTYFDD---SIVIFFWSNRKKFVV 199
           IT+K+A    N+N+ V     I S +EL+  F     S V+FFW    KF++
Sbjct: 384 ITWKVAHFNGNSNVIVPAPDSILSYLELSIQFKTEKPSGVLFFWKEDSKFLI 435


>AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5b protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 142 HHGSRLFEHGVPRHRTESRNNKLFSVTPKE 231
           HHGS    H  P  +     N+  + TPKE
Sbjct: 83  HHGSAKCSHSEPEEKMLIVENRFLAQTPKE 112


>AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5a protein.
          Length = 618

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 142 HHGSRLFEHGVPRHRTESRNNKLFSVTPKE 231
           HHGS    H  P  +     N+  + TPKE
Sbjct: 127 HHGSAKCSHSEPEEKMLIVENRFLAQTPKE 156


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 215 LLLQKNIT----IESSKYVFSSIVEYILILTLMFAFSAILYVIYKSYISPVFYKKELTEV 382
           L LQ+NIT    ++        +   ++IL  +F  + ++YVIYK+  + V  +K +T V
Sbjct: 27  LELQENITDSQPMDPPSLEIMMLHHLMIILVTLFGNTLLIYVIYKN--NAVLRRKRVTPV 84


>Z68121-1|CAA92204.2|  174|Caenorhabditis elegans Hypothetical
           protein T24D3.1 protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 FHPPSRKPSLRTRRAPTPDRKQKQQTFFC 218
           F  PS  PS  T+ + TP     +++F C
Sbjct: 86  FSTPSTSPSTSTQSSTTPSNSDNKKSFQC 114


>Z50796-3|CAA90667.1|  184|Caenorhabditis elegans Hypothetical
           protein T05A6.1 protein.
          Length = 184

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 129 IFHPPSRKPSLRTRRAPTP 185
           IF P SR+P++RTR + +P
Sbjct: 165 IFTPKSRRPTIRTRSSCSP 183


>U97405-11|AAB53004.1|  672|Caenorhabditis elegans Hypothetical
           protein T09B4.1 protein.
          Length = 672

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +2

Query: 206 NFFLLLQKNITIESSKYVFSSIVEYILILTLMFAFSAILYVIYKSYISPVFYKKELTEVG 385
           N F  L   +T+     + +  V+  L+   +FAF+        +Y   +F+   LT  G
Sbjct: 254 NLFCFLLCGMTLYQVVLIMTRSVKISLLAVSIFAFNPASIFFSSAYSESMFFTMTLT--G 311

Query: 386 FXHIPQGSRTRG 421
           F  +  G R +G
Sbjct: 312 FVFMLFGLRGKG 323


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 245 SSKYVFSSIVEYILILTLMFAFSAILYVIYKSYISPVFYKKE 370
           S  ++F++   YI++L   F F A+ +     ++ PV+ K E
Sbjct: 686 SGSFIFTAF--YIVLLICRFVFQALAFFWLSFWLDPVWKKVE 725


>AF302237-1|AAG21385.1|  174|Caenorhabditis elegans GATA-type
           transcription factor protein.
          Length = 174

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 FHPPSRKPSLRTRRAPTPDRKQKQQTFFC 218
           F  PS  PS  T+ + TP     +++F C
Sbjct: 86  FSTPSTSPSTSTQSSTTPSNSDNKKSFQC 114


>AF179358-1|AAF13868.1|  184|Caenorhabditis elegans cyclin-dependent
           kinase inhibitor protein.
          Length = 184

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 129 IFHPPSRKPSLRTRRAPTP 185
           IF P SR+P++RTR + +P
Sbjct: 165 IFTPKSRRPTIRTRSSCSP 183


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +2

Query: 119 DRQHFPSAITEAVSSNTACPDTGPKAETTNFFLLLQKNI 235
           +R HF   I  A S N AC   G K  T N  LL +KNI
Sbjct: 370 ERNHFFDTIGFACSENCAC---GGKC-TNNITLLPEKNI 404


>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 146 TEAVSSNTACPDTGPKAETTNFFLLLQKNITIESSKYVFSSIVEYILILTLMFAFS 313
           T+  ++ TA P+T P+A TT    L + +I I+ S       V   ++ T +  F+
Sbjct: 410 TKTKTTVTARPETKPEARTTTGIQLSRNDIPIDCSDADLQKCVPAYIMPTDLTGFA 465


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 VLRDFVCYIQVIYQSCFL*KGTDRSRLXSYTSRV 408
           V   +  +  ++Y  CFL   TD SRL  Y ++V
Sbjct: 463 VCTQYTAFYDILYLLCFLVFFTDFSRLSRYENQV 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,473
Number of Sequences: 27780
Number of extensions: 200566
Number of successful extensions: 619
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)