Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K01
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   157   5e-40
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   157   5e-40
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    40   1e-04
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   2.2  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   3.8  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    24   6.7  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   6.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    23   8.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   8.8  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    23   8.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    23   8.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  157 bits (380), Expect = 5e-40
 Identities = 70/91 (76%), Positives = 80/91 (87%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 222
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 223 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCL 315
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCL
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCL 91


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  157 bits (380), Expect = 5e-40
 Identities = 70/91 (76%), Positives = 80/91 (87%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 222
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 223 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCL 315
           QPNSAIRKCVRVQLIKNGKKVTAFVP DGCL
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFVPHDGCL 91


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +1

Query: 169 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG 92


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 106 WADKEFKKAHMGTKWKANPFGGASHAKGIV 195
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 112 PPIAVHDGGSRAYAP 68
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 165 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYS 58
           E + LP R  +  L FF +PSL + + +++  ++ S
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNAS 235


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 93 TVVHVLTRRSYSSGFTHLDSTTP 25
          T++HV   +S   GF H+  T+P
Sbjct: 30 TILHVNLAKSMLCGFIHVSYTSP 52


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 112 DKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 207
           D+EF+   +   +K  PF    HA  +V+  V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 207 NFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSLFTTVVHV 79
           +F+  +   V     ++++   + V  L+FF    LF+TV H+
Sbjct: 20  HFISSENCLVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHI 62


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 165 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYSSGFTHL 40
           E +    +T    +E  +   L TT+V+ LT  +  +   HL
Sbjct: 568 ETIIESLKTSPNIIETIISEDLITTIVNALTNSTSQNKSMHL 609


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 49  KPRGIRTARKHVNHRREQRWADKEFKKAH-MGTKWK 153
           KP     A+K VN +R++R A    KKA  +G K K
Sbjct: 395 KPGENPLAKKKVNKKRKERAAQWRNKKAESVGKKQK 430


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
 Frame = +3

Query: 141 YEMEG*PFRWC---ISRKGHRP 197
           + ME  PFRWC   +   G RP
Sbjct: 801 HSMEESPFRWCSKVVHENGFRP 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,295
Number of Sequences: 5004
Number of extensions: 30736
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)