Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_K01
         (326 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p pro...   188   1e-48
AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA...   188   1e-48
M19494-1|AAA28935.1|  140|Drosophila melanogaster protein ( D.me...    49   1e-06
BT015958-1|AAV36843.1|  140|Drosophila melanogaster RH56553p pro...    49   1e-06
AL133505-2|CAB65841.1|  140|Drosophila melanogaster EG:BACH59J11...    49   1e-06
AL133505-1|CAB63528.1|  154|Drosophila melanogaster EG:BACH59J11...    49   1e-06
AE014298-399|AAF45781.1|  140|Drosophila melanogaster CG7925-PB ...    49   1e-06
AJ250320-1|CAB65721.1|  140|Drosophila melanogaster technical kn...    46   8e-06
BT003270-1|AAO25027.1|  926|Drosophila melanogaster LD20211p pro...    29   1.8  
AY069361-1|AAL39506.1|  513|Drosophila melanogaster LD06532p pro...    29   1.8  
AE014296-66|AAF47366.1|  926|Drosophila melanogaster CG7008-PA p...    29   1.8  
AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA...    28   2.4  
DQ138872-1|ABA86478.1| 1228|Drosophila melanogaster CG12234 prot...    28   3.2  
AY118535-1|AAM49904.1| 1241|Drosophila melanogaster LD26789p pro...    28   3.2  
AF222746-1|AAG53520.1| 1241|Drosophila melanogaster RanBP21 prot...    28   3.2  
AE014298-2905|AAF48995.1| 1241|Drosophila melanogaster CG12234-P...    28   3.2  
AY119520-1|AAM50174.1|  667|Drosophila melanogaster GH14596p pro...    27   4.2  
AF246991-1|AAF64300.1| 1640|Drosophila melanogaster unknown prot...    27   4.2  
AE014296-64|AAF47364.2| 1773|Drosophila melanogaster CG7020-PA p...    27   4.2  
Y15251-1|CAA75535.1|  943|Drosophila melanogaster RNA binding pr...    26   9.7  

>AY089523-1|AAL90261.1|  143|Drosophila melanogaster GM14585p
           protein.
          Length = 143

 Score =  188 bits (459), Expect = 1e-48
 Identities = 83/91 (91%), Positives = 90/91 (98%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 222
           MGKPRG+RTARKHVNHRR+QRWADK++KKAH+GT+WKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60

Query: 223 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCL 315
           QPNSAIRKCVRVQLIKNGKK+TAFVPRDG L
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGSL 91


>AE013599-1845|AAF58277.2|  143|Drosophila melanogaster CG8415-PA
           protein.
          Length = 143

 Score =  188 bits (459), Expect = 1e-48
 Identities = 83/91 (91%), Positives = 90/91 (98%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 222
           MGKPRG+RTARKHVNHRR+QRWADK++KKAH+GT+WKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1   MGKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAK 60

Query: 223 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCL 315
           QPNSAIRKCVRVQLIKNGKK+TAFVPRDG L
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPRDGSL 91


>M19494-1|AAA28935.1|  140|Drosophila melanogaster protein (
           D.melanogaster tko (technical knockout) locus mRNA
           encoding tko gene product,complete cds. ).
          Length = 140

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +1

Query: 133 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG 99


>BT015958-1|AAV36843.1|  140|Drosophila melanogaster RH56553p
           protein.
          Length = 140

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +1

Query: 133 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG 99


>AL133505-2|CAB65841.1|  140|Drosophila melanogaster
           EG:BACH59J11.1,FBgn0003714;tko protein.
          Length = 140

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +1

Query: 133 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG 99


>AL133505-1|CAB63528.1|  154|Drosophila melanogaster
           EG:BACH59J11.1,FBgn0003714;tko protein.
          Length = 154

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +1

Query: 133 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G
Sbjct: 56  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG 113


>AE014298-399|AAF45781.1|  140|Drosophila melanogaster CG7925-PB
           protein.
          Length = 140

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +1

Query: 133 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+L   GK++ A++P  G
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKEMVAYIPGIG 99


>AJ250320-1|CAB65721.1|  140|Drosophila melanogaster technical
           knockout protein protein.
          Length = 140

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 24/59 (40%), Positives = 36/59 (61%)
 Frame = +1

Query: 133 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 309
           H+ T+    P  G   AKG+VL+ +  + K+PNSA RKCV V+    GK++ A++P  G
Sbjct: 42  HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVR-HSTGKEMVAYIPGIG 99


>BT003270-1|AAO25027.1|  926|Drosophila melanogaster LD20211p
           protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 235 AIRKCVRVQLIKNGKKVTAFVPRDGCLXT 321
           A+R    V+ + +G ++  FVP+D CL T
Sbjct: 534 ALRTEAIVEFVASGSRLRIFVPKDSCLVT 562


>AY069361-1|AAL39506.1|  513|Drosophila melanogaster LD06532p
           protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 235 AIRKCVRVQLIKNGKKVTAFVPRDGCLXT 321
           A+R    V+ + +G ++  FVP+D CL T
Sbjct: 121 ALRTEAIVEFVASGSRLRIFVPKDSCLVT 149


>AE014296-66|AAF47366.1|  926|Drosophila melanogaster CG7008-PA
           protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 235 AIRKCVRVQLIKNGKKVTAFVPRDGCLXT 321
           A+R    V+ + +G ++  FVP+D CL T
Sbjct: 534 ALRTEAIVEFVASGSRLRIFVPKDSCLVT 562


>AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA
           protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 160 PFGGASHAKGIVLEKVGVEAK--QPNSAIRKCVRVQLIK 270
           PFG   +   +VLE+ G   K  Q    IRKCV +  +K
Sbjct: 123 PFGNVEYVLKVVLERRGTHNKCFQQRLVIRKCVELADLK 161


>DQ138872-1|ABA86478.1| 1228|Drosophila melanogaster CG12234 protein.
          Length = 1228

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 188  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 87
            PF    PP       VP++A L  L   R +RRW
Sbjct: 910  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 943


>AY118535-1|AAM49904.1| 1241|Drosophila melanogaster LD26789p protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 188  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 87
            PF    PP       VP++A L  L   R +RRW
Sbjct: 917  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 950


>AF222746-1|AAG53520.1| 1241|Drosophila melanogaster RanBP21 protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 188  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 87
            PF    PP       VP++A L  L   R +RRW
Sbjct: 917  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 950


>AE014298-2905|AAF48995.1| 1241|Drosophila melanogaster CG12234-PA
            protein.
          Length = 1241

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 188  PFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRW 87
            PF    PP       VP++A L  L   R +RRW
Sbjct: 917  PFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW 950


>AY119520-1|AAM50174.1|  667|Drosophila melanogaster GH14596p
           protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 141 YEMEG*PFRWCISRKGHRPRESWCRS*AAQLC 236
           YE+E  P  W  +   HR R+++C     +LC
Sbjct: 267 YEVEANPSLWLSTLSQHRVRDTFCSYGVIELC 298


>AF246991-1|AAF64300.1| 1640|Drosophila melanogaster unknown protein.
          Length = 1640

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 141  YEMEG*PFRWCISRKGHRPRESWCRS*AAQLC 236
            YE+E  P  W  +   HR R+++C     +LC
Sbjct: 1240 YEVEANPSLWLSTLSQHRVRDTFCSYGVIELC 1271


>AE014296-64|AAF47364.2| 1773|Drosophila melanogaster CG7020-PA
            protein.
          Length = 1773

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 141  YEMEG*PFRWCISRKGHRPRESWCRS*AAQLC 236
            YE+E  P  W  +   HR R+++C     +LC
Sbjct: 1373 YEVEANPSLWLSTLSQHRVRDTFCSYGVIELC 1404


>Y15251-1|CAA75535.1|  943|Drosophila melanogaster RNA binding
           protein protein.
          Length = 943

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 64  RTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 231
           R  R+   H ++Q+   ++ +K H   K +  P GGA+     V      EAK+ N
Sbjct: 662 REQRRRQAHEQQQQQQQQQQQK-HGIKKSRTEPSGGATSPPSKVKGPANAEAKESN 716


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,069,872
Number of Sequences: 53049
Number of extensions: 364934
Number of successful extensions: 1068
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 693319869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)