Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_J24
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    29   0.58 
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.4  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    26   5.4  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.4  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   9.4  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 244 RNAKPICLFVSQSLLVIFYSYFSNIP---KFIYIKIA 143
           R  + + L  S+S++ +FY Y+ N+P   +F+ + IA
Sbjct: 393 REQRDVLLIGSKSIIRVFYGYYMNVPAKVRFLTLSIA 429


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 620 PIPSTSPVRXRTAHCSMXYAHHTXIFHHQASHYSVSGSAS*HNIPSMLDQHQPIPPL 450
           P+PS+  +  +    S  + H + +  + AS  +VS       IPS+   +   PPL
Sbjct: 73  PLPSSCDIDFKDYSTSAFHLHFSPLTPNHASTEAVSNFKQSSTIPSISKSNLTNPPL 129


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 238 AKPICLFVSQSLLVIFYSYFSNIPKFIYIKIAFKVILHVELSVLF 104
           A PICLFV   +L++   YF       Y  + F ++L V + V +
Sbjct: 165 AFPICLFVINHILILL-GYFQCSYSVFYASV-FYILLGVFIRVFY 207


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
 Frame = +2

Query: 356 VVVWEWQSNGQWLPHTPSVTRTLERAHAKKLTRVVLADADPALKGYYVN----LLTLTQS 523
           ++VWEWQS    L             ++    R++    D  +K + +N    ++T TQ 
Sbjct: 321 LLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQH 380

Query: 524 NETPDGGILXCGVRXSCYSVQSVXGRGWCWEWARF 628
                G  L    R +     S+ G    W+  R+
Sbjct: 381 TSAVSG--LCFSKRGNVLFSSSLDGSVRAWDLIRY 413


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 518 VSGSAS*HNIPSMLDQHQPIPPL 450
           ++ S++ H +  M+  H+P PPL
Sbjct: 7   IASSSALHGLDEMVSAHKPSPPL 29


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 363 YGSGSQMVNGYHTRQVLQGP 422
           YGS S  VNG+ T+Q+   P
Sbjct: 439 YGSSSPYVNGHQTQQISSLP 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,518
Number of Sequences: 5004
Number of extensions: 50109
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)