Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_J23
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce...   115   7e-27
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.1  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   4.0  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   4.0  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.3  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   7.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.3  

>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score =  115 bits (276), Expect = 7e-27
 Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
 Frame = +1

Query: 190 DPSRPMKERFRALFTLRNI---GGETAIQCISECFKDESVLLKHELAYCLGQMQDRRAIP 360
           D S P+  R+RALF+L  +   G + A+  I + F D+S LLKHE+AY +GQ   + A+ 
Sbjct: 22  DKSNPLSFRYRALFSLNALAKKGDKRAVDAIYKAFIDDSELLKHEMAYVMGQSGQQYAVQ 81

Query: 361 ILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEK-YQHDSAIEVAETCQIALQRLNW 537
            L +++ D +   +VRHEA EALGA+G      +LEK Y+ D    + ETC++A+ R+ W
Sbjct: 82  PLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKYYKEDPLAPIRETCELAIARIQW 141

Query: 538 VANDSKENDNLSKSLYTS-VDPAPP 609
                K N+ ++ S+Y S VDPAPP
Sbjct: 142 KNGLDKNNEKITPSMYDSVVDPAPP 166



 Score =  101 bits (241), Expect = 1e-22
 Identities = 50/132 (37%), Positives = 77/132 (58%)
 Frame = +1

Query: 163 VKNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQ 342
           V  + + + D + P+  R+R +F LRNIG E A+  +++ FKD S L +HE+A+  GQM 
Sbjct: 178 VAKLRSEIVDQNLPLFYRYRVMFRLRNIGNEEAVLALTDGFKDPSPLFRHEIAFVFGQMI 237

Query: 343 DRRAIPILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIAL 522
              ++P L  VLE+    P+VRHEA EALG I +     +L+K+  D    VAE+C +AL
Sbjct: 238 APASVPALIKVLENTEEVPMVRHEAAEALGGIANDECLPVLKKFSKDDVRVVAESCIVAL 297

Query: 523 QRLNWVANDSKE 558
             + +  +   E
Sbjct: 298 DMIEYEKSGDME 309


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 430 GAIGDPNL-RELLEKYQHDSAIEVAE 504
           G   D NL +ELL++Y+H+SA++ A+
Sbjct: 509 GMFNDMNLSQELLQEYKHNSALQSAK 534


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -2

Query: 504 LCYF-YC*IMLILFEQLSEIRVSYCPKGFSGFMANY--WIMVWV 382
           L YF YC   + LF  +      Y P G + FM ++  WI++++
Sbjct: 53  LIYFCYCANFIALFRVIFGTIFVYSPDGITPFMTDFVRWILIYL 96


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/69 (20%), Positives = 26/69 (37%)
 Frame = +1

Query: 436 IGDPNLRELLEKYQHDSAIEVAETCQIALQRLNWVANDSKENDNLSKSLYTSVDPAPPSI 615
           I +P    + E  +HDS    A+   + +   N   ND    + +   +    +P  P  
Sbjct: 13  IAEPTFENVSEHNEHDSGSAEAQVETLEVPLSNETDNDDATENAVPAEVQAPEEPKEPET 72

Query: 616 ENNLXALKD 642
            +N+    D
Sbjct: 73  VDNIDPADD 81


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 28  INTCVLRCC-XGFLXTSRIFFIIH 96
           ++ CVLRCC   +  T R  FI+H
Sbjct: 150 LSHCVLRCCLSNWSWTHRAMFILH 173


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -3

Query: 413 SWRTIGSWFGSSNTLLNIGMALLSCI*PKQ*ASSCFNKTDSSLKHSLIHCMAVSPPMFLN 234
           +WRT+ S + S  TL N     +S       +   F ++      S +HC   S      
Sbjct: 364 AWRTLNSLYPSKATLSN---NFVSTSDLSFWSREYFVRSKGK---SYLHCFWCSASWLAG 417

Query: 233 VNRARKRSFIGLEGS 189
           ++ A+K++F GLE +
Sbjct: 418 ISLAKKKNFDGLENA 432


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 625 NYFQCWAEQDPLKCIN 578
           +YFQC+AEQD L  I+
Sbjct: 220 DYFQCFAEQDLLVAIS 235


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 292 ESVLLKHELAYCLGQMQDRRAIPILRSVLEDPNHDPIV 405
           ES+L  H + + LG++   +   IL+ + + P+H   +
Sbjct: 816 ESLLYNHVVRFTLGELNRDQQNAILKQIPKVPDHSSYI 853


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 308 FNKTDSSLKHSLIHCMAVSPPMFLNVNRARKRSFIGLEGSFRTFPM 171
           F K++S L  S +   ++SP  FL+V  +    F     S+R  P+
Sbjct: 301 FLKSNSGLWRSFLSLTSLSPEEFLSVYNSACSDFPECGPSYRLLPV 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,447
Number of Sequences: 5004
Number of extensions: 43443
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)