Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J23
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939... 126 2e-29
12_01_0405 - 3207977-3208018,3208097-3208215,3208303-3208429,320... 125 3e-29
08_02_0020 + 11303438-11304213,11304321-11304699 30 1.8
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 29 3.2
05_06_0151 - 25999366-26000044,26004820-26005637 29 4.2
10_08_0431 + 17871432-17871593,17871684-17871714,17872898-178730... 28 7.3
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 9.7
>12_02_1187 -
26793455-26793496,26793599-26793717,26793813-26793939,
26794382-26794520,26794565-26794833,26794923-26795056,
26795630-26795750
Length = 316
Score = 126 bits (303), Expect = 2e-29
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 1/144 (0%)
Frame = +1
Query: 184 LNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQDRRAIPI 363
L D ++P+ ERFRALF+LRN+ G+ + + + +D S LL HE A+ LGQMQD AIP
Sbjct: 9 LLDAAQPIAERFRALFSLRNLRGDAPRRALLQAARDSSNLLAHEAAFALGQMQDAEAIPA 68
Query: 364 LRSVLEDPNHDPIVRHEAGEALGAIG-DPNLRELLEKYQHDSAIEVAETCQIALQRLNWV 540
L +VL+D + PIVRHEA EALGAIG + ++ L E D A+EV ETC++A++R+
Sbjct: 69 LEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESLAVDPAVEVQETCELAIRRIEEQ 128
Query: 541 ANDSKENDNLSKSLYTSVDPAPPS 612
N S ++ + S + SVDPA P+
Sbjct: 129 KNTSGV-ESATVSPFLSVDPALPA 151
Score = 97.9 bits (233), Expect = 6e-21
Identities = 50/119 (42%), Positives = 75/119 (63%)
Frame = +1
Query: 181 VLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQDRRAIP 360
+LN+ M ER+ ALF LRN G+ A+ I +S LL+HE+AY LGQ+Q++ A
Sbjct: 178 LLNE-QESMYERYAALFALRNDSGDAAVSAIVAALGVKSALLRHEVAYVLGQLQNKAASD 236
Query: 361 ILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIALQRLNW 537
L +VL++ + P+VRHEA EALG+I D LLE++ D V+++C++AL L +
Sbjct: 237 ALSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVALSMLEY 295
>12_01_0405 -
3207977-3208018,3208097-3208215,3208303-3208429,
3208776-3208914,3209001-3209227,3209389-3209522,
3209659-3209779
Length = 302
Score = 125 bits (301), Expect = 3e-29
Identities = 69/150 (46%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Frame = +1
Query: 166 KNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQD 345
K + ++L D ++P+ ERFRALF+LRN+ G+ + + +D S LL HE A+ LGQMQD
Sbjct: 3 KFLCDLLLDTAQPIAERFRALFSLRNLHGDGPRCALLQAARDSSNLLAHEAAFALGQMQD 62
Query: 346 RRAIPILRSVLEDPNHDPIVRHEAGEALGAIG-DPNLRELLEKYQHDSAIEVAETCQIAL 522
AIP L +VL+D + PIVRHEA EALGAIG + ++ L E D A+EV ETC++AL
Sbjct: 63 AEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSIPLLEESLAADPAVEVQETCELAL 122
Query: 523 QRLNWVANDSKENDNLSKSLYTSVDPAPPS 612
+R+ N + +++ + S + SVDPA P+
Sbjct: 123 RRIEQQKN-AGVSESTTISPFLSVDPALPA 151
Score = 98.7 bits (235), Expect = 3e-21
Identities = 50/126 (39%), Positives = 76/126 (60%)
Frame = +1
Query: 160 AVKNIGNVLNDPSRPMKERFRALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQM 339
+V + +L + M ER+ ALF LRN + A+ I +S LLKHE+AY LGQ+
Sbjct: 156 SVHQLREILLNEQESMYERYAALFALRNDSRDAAVSAIVAALGAKSALLKHEVAYVLGQL 215
Query: 340 QDRRAIPILRSVLEDPNHDPIVRHEAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIA 519
Q++ A L +VL++ + P+VRHEA EALG+I D LLE++ D V+++C++A
Sbjct: 216 QNKAASDALSTVLKNVDEHPMVRHEAAEALGSIADQESIALLEEFAKDPEPIVSQSCEVA 275
Query: 520 LQRLNW 537
L L +
Sbjct: 276 LSMLEY 281
>08_02_0020 + 11303438-11304213,11304321-11304699
Length = 384
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +1
Query: 202 PMKERFRALFTLRNIGGETAIQCISECFKDES--VLLKHELAYC----LGQMQDRRAIPI 363
PM LF L + G TA I C++ + + LA C G+M+ R +
Sbjct: 7 PMLLPLAVLFLLGSGGVATAANVIDRCWRGQRNWAADRQRLAVCSVGFAGKMRQNRGAGV 66
Query: 364 LRSVLEDPNHDPI 402
+ + DP+ DP+
Sbjct: 67 VAYTVTDPSDDPV 79
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Frame = +1
Query: 271 ISECFKDESVLLKHELAYCLGQM--------QDRRAIPILRSVLEDPNHDPIVRHEAGEA 426
+ C KD+ ++ A C+ ++ +DR + L+ ++ D N P+V A A
Sbjct: 216 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEALKDLISDNN--PMVVANAVAA 273
Query: 427 LGAIGDPNLRELLEKYQH 480
L I D + R + E H
Sbjct: 274 LAEIQDSSTRPIFEITSH 291
>05_06_0151 - 25999366-26000044,26004820-26005637
Length = 498
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 205 LAWRDHLEHSRCFSLRXHSRLPFDFIIFECF 113
LAW D L H+ +++ H R P ++F CF
Sbjct: 267 LAWLDRLSHTHVYNIVSH-RQPDRSVVFLCF 296
>10_08_0431 +
17871432-17871593,17871684-17871714,17872898-17873005,
17873251-17873353,17874069-17874115,17874116-17874291,
17874736-17874822
Length = 237
Score = 27.9 bits (59), Expect = 7.3
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 367 RSVLEDPNHDPIVRH-EAGEALGAIGDPNLRELLEKYQHDSAIEVAETCQIALQRLNWVA 543
+SV+E IV+ + +A+GAIG+ N + E + A +A + N +
Sbjct: 109 KSVVEPTLEFAIVQDADRLDAIGAIGNMNKCSVFESFPKTPA-GIARCFTYGGSKKNTL- 166
Query: 544 NDSK--ENDNLSKSLYTSVDPAPPSIEN---NLXALKDV 645
+D K DNLSK Y S D SI + L LKD+
Sbjct: 167 HDPKILPRDNLSKEKYMSKDEKQTSINHFHEKLFKLKDM 205
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 220 RALFTLRNIGGETAIQCISECFKDESVLLKHELAYCLGQMQDRRAIP 360
RAL R++GG+TA CF L H C+ + RA+P
Sbjct: 887 RALRQHRDVGGDTAGAVSRRCFWAVERFLAHGGERCVRDVTADRALP 933
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,750
Number of Sequences: 37544
Number of extensions: 267499
Number of successful extensions: 697
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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