Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J19
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0257 + 26723858-26724049,26724073-26724230,26724886-267250... 45 5e-05
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 45 5e-05
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 45 5e-05
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 32 0.46
04_03_0108 - 11340504-11340680,11341580-11341665,11341784-113418... 31 1.1
01_01_1106 + 8750597-8754031 28 5.6
04_01_0215 - 2728413-2728599,2729794-2730318,2730548-2730755,273... 27 9.8
>05_06_0257 +
26723858-26724049,26724073-26724230,26724886-26725024,
26725130-26725315,26727117-26727310,26728113-26728193,
26728248-26728338,26728414-26728590
Length = 405
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +2
Query: 95 LQKVRLSSDVALVCMQHALSTEKEEIMGLLIGEV 196
L +VR+ +V L C+ HAL+TE EE+MGLL G++
Sbjct: 3 LTEVRIGEEVWLTCLSHALTTETEEVMGLLFGDI 36
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = +3
Query: 405 DLATQSMYQRMDAXFVGIIFAVFLTDQSTKAPSVQITCFQSINEGASQSRIEIEMEIV 578
D+ TQ+M+Q M+ FVG+IF+ F ++ + K +Q+ FQS+ G QS + + ++
Sbjct: 135 DVRTQAMFQLMEPGFVGLIFSCF-SEDAQKVGKIQVIAFQSLG-GNQQSVVPVNDPVI 190
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 45.2 bits (102), Expect = 5e-05
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = +2
Query: 98 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 277
++V +SS L ++H + E+MGL++GE D+ V V + + + V +
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYT----VRVVDVFAMPQSGTGVSV 82
Query: 278 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPS 397
V T + L + G+P VVGWYHSHP W S
Sbjct: 83 EAVDHVFQTNMLDMLK-QTGRPEMVVGWYHSHPGFGCWLS 121
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 45.2 bits (102), Expect = 5e-05
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = +2
Query: 98 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 277
++V +SS L ++H + E+MGL++GE D+ V V + + + V +
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYT----VRVVDVFAMPQSGTGVSV 82
Query: 278 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPS 397
V T + L + G+P VVGWYHSHP W S
Sbjct: 83 EAVDHVFQTNMLDMLK-QTGRPEMVVGWYHSHPGFGCWLS 121
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 281 EEQLVQATVRAEELAAEV-GQPLRVVGWYHSHPHITVWPS 397
+ + + +V A L ++ G+ VVGWYHSHP W S
Sbjct: 131 DHNVSEVSVFANTLMTDLAGRLENVVGWYHSHPGYGCWLS 170
>04_03_0108 -
11340504-11340680,11341580-11341665,11341784-11341827,
11342339-11342428,11343762-11343928,11343986-11344010,
11344636-11344797,11345376-11345422,11345926-11345985,
11346094-11346465
Length = 409
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 143 HALSTEKEEIMGLLIGEVHDNGAL-VSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEE 319
HAL + GLL+G + D A ++VS L P + + + T+ +
Sbjct: 20 HALKHPAAAVNGLLVGRLLDGAASPAAVVSIADAVPLSHHPHHLPLLPTLELALTLVEDH 79
Query: 320 LAAEVGQPLRVVGWYHSH 373
AA Q L VVG+YH++
Sbjct: 80 FAA---QGLAVVGYYHAN 94
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 218 SIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPLRVV 355
S S+ +LRRL + V SE +L+Q + EEL E + LRV+
Sbjct: 1005 SSTSASLLRRLWIRKSDVSSSEWKLLQHRPKLEELTIEYCEMLRVL 1050
>04_01_0215 -
2728413-2728599,2729794-2730318,2730548-2730755,
2730946-2731001,2731294-2731394,2731923-2732150
Length = 434
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 345 RGWPTSAANSSALTVA*TSCSSDISTRS 262
+GWP++A +S T+A S S DI+ RS
Sbjct: 76 KGWPSAALRAST-TIATRSTSPDIAARS 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,925
Number of Sequences: 37544
Number of extensions: 227568
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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