Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J19
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signaloso... 48 6e-06
U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome re... 44 7e-05
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 29 2.2
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 29 2.2
L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81594-3|CAB76410.2| 441|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 27 8.7
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 27 8.7
>U80814-5|AAB37991.1| 368|Caenorhabditis elegans Cop-9 signalosome
subunit protein 5 protein.
Length = 368
Score = 48.0 bits (109), Expect = 6e-06
Identities = 32/100 (32%), Positives = 46/100 (46%)
Frame = +2
Query: 98 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 277
+++++S+ L HA EIMGLL G + N I+ V ++ RV
Sbjct: 54 KQIKISAIALLKMTMHAKRGGNLEIMGLLQGRIDANSF---IILDVFALPVEGTETRVNA 110
Query: 278 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPS 397
+ TV +E E G+ +VVGWYHSHP W S
Sbjct: 111 QAQAYEYMTVYSEMCDTE-GRKEKVVGWYHSHPGYGCWLS 149
>U00032-7|AAA50633.1| 319|Caenorhabditis elegans Hypothetical
protein F37A4.5 protein.
Length = 319
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/100 (32%), Positives = 49/100 (49%)
Frame = +2
Query: 98 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 277
+ V +SS L ++HA S E+MGL++G+ D+ + V+ V + + V +
Sbjct: 27 ETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTIN--VTDVFA--MPQSGTSVTV 82
Query: 278 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPS 397
V T + +L VG+ VVGWYHSHP W S
Sbjct: 83 ESVDPVYQT-KHMDLLKLVGRTENVVGWYHSHPGFGCWLS 121
>AF077534-8|AAC26287.1| 312|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 11 protein.
Length = 312
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +2
Query: 98 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 277
+ V +SS L ++H + E+MGL++GE D+ V+ + + + + V +
Sbjct: 31 ETVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYT----VNVIDVFAMPQSGTGVSV 86
Query: 278 SE-EQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPS 397
+ + QA + ++ + G+P VVGWYHSHP W S
Sbjct: 87 EAVDPVFQAKML--DMLKQTGRPEMVVGWYHSHPGFGCWLS 125
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 32.7 bits (71), Expect = 0.23
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +2
Query: 362 YHSHPHIT---VWPSHXXFGYSINVSKDGCXFCWNYFCSISYRPINKGPFS 505
Y HP I VW F + +N +DG +CWNYF S P ++ ++
Sbjct: 231 YGFHPTIRNGKVWCIRVFFHFVLNY-QDGSDYCWNYFHSTLSGPADENEYN 280
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = -3
Query: 336 PTSAANSS----ALTVA*TSCSSDISTRSGFLSKRRSI----TDDTIETSAPLS 199
PTS ANSS A++ T D T S SKR+++ TDDT +S PLS
Sbjct: 8 PTSKANSSPEGKAMSPMKTQLLDDQQTPSSSSSKRKNLRKPSTDDTPSSSEPLS 61
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1402 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1442
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1402 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1442
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1495 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1535
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 260 PDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHI 382
P R+ +++ Q +Q V G+P R+ W HP+I
Sbjct: 1494 PARLNVNQPQAIQPQVDPPVQTVNEGEPSRIRCWVPGHPNI 1534
>L16685-2|AAY43982.1| 262|Caenorhabditis elegans Hypothetical
protein ZC21.9 protein.
Length = 262
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -3
Query: 285 SSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPMISSFSVDNACCIQTKATSD 115
SSD S R L ++ D +T++PLS S S P+++S IQT A S+
Sbjct: 84 SSD-SIRQETLRLNQAFFDSLTQTASPLSMQSSQSDPILTSQMDSQPIHIQTNAQSE 139
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 336 PTSAANSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPM 172
P S+A A + ++ +T SG+ SKR + D+ + T AP + +P P+
Sbjct: 126 PAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQV-TPAPAAAPAPADAPV 179
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 336 PTSAANSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPM 172
P S+A A + ++ +T SG+ SKR + D+ + T AP + +P P+
Sbjct: 454 PAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAYGDEQV-TPAPAAAPAPADAPV 507
>Z81594-3|CAB76410.2| 441|Caenorhabditis elegans Hypothetical
protein T20F10.5 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 110 LSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKP 262
LSS VAL+ + H T + E+ +I + + L+ +++S++L D P
Sbjct: 143 LSSGVALIMLSHGADTHRLEVHS-IISSLFTHCLLLQLIASLLLSE-DSNP 191
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 167 EIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPL 346
E+ +L ++ D GA++S+ L+R D K RVEIS Q ++ + +
Sbjct: 624 EVFSIL--DIGDQGAILSVSGE--LKRQDHKV-RVEISATD--QGGLQGRCVVNVFIDDV 676
Query: 347 RVVGWYHSHPHITVWPSHXXFGYSI 421
+++ HP P H GY +
Sbjct: 677 NSAPYFNDHPFSVKIPEHSPIGYPV 701
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 167 EIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPL 346
E+ +L ++ D GA++S+ L+R D K RVEIS Q ++ + +
Sbjct: 624 EVFSIL--DIGDQGAILSVSGE--LKRQDHKV-RVEISATD--QGGLQGRCVVNVFIDDV 676
Query: 347 RVVGWYHSHPHITVWPSHXXFGYSI 421
+++ HP P H GY +
Sbjct: 677 NSAPYFNDHPFSVKIPEHSPIGYPV 701
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 167 EIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPL 346
E+ +L ++ D GA++S+ L+R D K RVEIS Q ++ + +
Sbjct: 624 EVFSIL--DIGDQGAILSVSGE--LKRQDHKV-RVEISATD--QGGLQGRCVVNVFIDDV 676
Query: 347 RVVGWYHSHPHITVWPSHXXFGYSI 421
+++ HP P H GY +
Sbjct: 677 NSAPYFNDHPFSVKIPEHSPIGYPV 701
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,441,936
Number of Sequences: 27780
Number of extensions: 226829
Number of successful extensions: 624
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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