Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J18
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 30 0.25
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 29 0.43
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 3.1
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 3.1
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 27 3.1
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 4.0
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.1
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.3
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 9.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.3
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 518 CSSCIVRSTPWLPWRLRRKRTPSVWRSR 601
C C + PW R + TPSVW S+
Sbjct: 1499 CPDCCSKEGKLYPWNTRPRSTPSVWLSQ 1526
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 29.5 bits (63), Expect = 0.43
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -1
Query: 427 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 335
SD ++ G+ P +PA +PLS+R+ P Y+P
Sbjct: 30 SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -3
Query: 386 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 231
S + IP+ P T + + KNS A + +L + +D S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 403 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 224
+ PS+P + +P+S +PP R +S+ S L + L +FP P ++ Y
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216
Query: 223 SD 218
D
Sbjct: 217 QD 218
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = -1
Query: 433 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 269
S + D G S P+E+MPL + + P +PG +++ + L FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273
Query: 268 LLAF 257
L+ F
Sbjct: 274 LIPF 277
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 440 ERFGIRPGYEWNSFTLASSGDNAAIP 363
E+ G R GY+ +S ASS N+ IP
Sbjct: 155 EKMGYRGGYQMHSTPWASSPRNSTIP 180
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +1
Query: 481 QAPGKSKCHRLHL*QLHCTQHPLATLEATEETYPLRLEEPVYGLMFQEVKY 633
Q PG L++ T HP+ + + YP + PV G+ + + +
Sbjct: 379 QHPGLRSLDPLNIQDGDLTMHPMHIRHSQSDFYPSGINTPVSGINYPNLGF 429
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 352 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 218
K Y+P I GL++ TLS +LM L+ P ++ + G D
Sbjct: 50 KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 373 PLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAF 257
PLSQ+ P + P LS+ L FFL+ L+F
Sbjct: 91 PLSQKRPFPNFLHPFTGSELSLFRCLLLFFFFLLFFLSF 129
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 433 SGSDQDMNGIASPSRPAEI-MPLSQRT 356
SGS D+ I SP+ PAE P + RT
Sbjct: 82 SGSSSDLLNIESPASPAEASSPFTVRT 108
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 416 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGS 285
Y WN A SG +A+ ++T SVK S +F +GLG+
Sbjct: 203 YVWN----ADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,570
Number of Sequences: 5004
Number of extensions: 52184
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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