Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_J12
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 289 STVSNQ*TFWIYLPSQPVSIESLVLKVQLHPYDLISA 179
           S V N    WI+  S+ +   S +  V L  +D+I A
Sbjct: 71  SLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMA 107


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 FNRYWLTWKINPKRLLV 277
           F  +WL W   P R+++
Sbjct: 319 FITFWLEWNAVPARVMI 335


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 FNRYWLTWKINPKRLLV 277
           F  +WL W   P R+++
Sbjct: 288 FITFWLEWNAVPARVMI 304


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 FNRYWLTWKINPKRLLV 277
           F  +WL W   P R+++
Sbjct: 339 FITFWLEWNAVPARVMI 355


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 227 FNRYWLTWKINPKRLLV 277
           F  +WL W   P R+++
Sbjct: 288 FITFWLEWNAVPARVMI 304


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 139 WGCGYRTLQTICSWLKLN 192
           W C  + LQ + SW+  N
Sbjct: 926 WSCRCKFLQELSSWVSDN 943


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 196 YDLISARNISSEEFYNRNPSPYRQI 122
           +DL+      +E +YN  P PY  I
Sbjct: 197 WDLLGVPGKRNEIYYNCCPEPYIDI 221


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 289 STVSNQ*TFWIYLPSQPVSIESLVLKVQLHPYDLISA 179
           S V N    WI+  S+ +   S +  V L  +D+I A
Sbjct: 71  SLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMA 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,189
Number of Sequences: 438
Number of extensions: 4624
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)