Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_J07
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.56 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   0.98 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = -1

Query: 285 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDXL 169
           D C  Y +    +T  DCG    P   +R   Q   + +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHI 509


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = -1

Query: 285 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDXL 169
           D C  Y +    +T  DCG    P   +R   Q   + +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHI 599


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 209 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 307
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 297 PLPDDHCRHYLFPEFRFTLFD 235
           PL +DH  HY  P      FD
Sbjct: 199 PLKEDHDDHYGVPTLEELGFD 219


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 73  SRXNHHVRRLDILLYQNFERNXQG 2
           S+ NH    L  +++ +++RN  G
Sbjct: 228 SQDNHSKEYLVSIMFSHYDRNNNG 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,109
Number of Sequences: 438
Number of extensions: 2591
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)