Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J06
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 36 0.005
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 36 0.007
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 1.8
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 27 3.1
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 26 5.4
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.4
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 5.4
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 25 7.2
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 7.2
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 7.2
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 9.5
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 9.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 9.5
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 35.9 bits (79), Expect = 0.005
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = +2
Query: 326 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 505
++ K + ++ +G+ S V+ +E + V T + + Y LTD S+E ENK L
Sbjct: 3443 LRNKCEPIISSFGFPISKSAVRTNIE-RCVQTSIESKYYKNLTDYSLENIYIIQENKSPL 3501
Query: 506 LVINKLLEPINVADSHWKQKTDKVVIFLAKSNPN 607
L+I+ + +++ S +K K ++ F KS N
Sbjct: 3502 LIIDPSSQILDILPSLYKGKASDLISFSNKSFQN 3535
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Frame = +2
Query: 338 YQVKLNV--YGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYLLV 511
+QVKL Y WDQ+ V + + + QV +++ +++ ++ E K +L+
Sbjct: 2 HQVKLEEAEYEWDQTIADVDIVIHVPKGTRAKSLQV--DMSNHDLKIQINVPERK--VLL 57
Query: 512 INKLLEPINVADSHWK-QKTDKVVIFLAKSNPNTTWS 619
L + IN+ +S W ++ +++VI L KSN WS
Sbjct: 58 SGPLEKQINLDESTWTVEEQERLVIHLEKSNKMEWWS 94
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 494 KDYLLVINKLLEPINVADSHWKQ 562
++YLL+ + P +V +SHWK+
Sbjct: 530 QEYLLIDRDVFGPFSVRESHWKK 552
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +1
Query: 82 DLHSIQTNCSFIKMSEAKIQEIRSDIEEFNDLLKQAKRKKVQDLLSLXDQKT*DRTNNIK 261
+L ++ + S ++ E KIQ I +IEE + L+ + V+ + QKT D+ +
Sbjct: 116 ELQALNNSLSPAEIRE-KIQSIDKEIEETSSKLESLRNGTVKQISKEAMQKT-DKNYDFA 173
Query: 262 RKG 270
+KG
Sbjct: 174 KKG 176
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = +1
Query: 97 QTNCSFIKMSEAKIQEIRSDIEEFNDLL-KQAKRKKVQDLL-SLXDQKT*DRTNNIKRKG 270
+TN + ++ + ++ S+ E+F+D+L +++ R + L + Q+ D +R+G
Sbjct: 50 RTNMPYFRLHNSSVRRRYSEFEKFHDMLERESGRVSIPPLPGKIFTQRFRDDVIEERRQG 109
Query: 271 --NF---DANGSITNTHNKYISS 324
NF A + TH++ +SS
Sbjct: 110 LENFLRLVAGHPLIQTHSRVLSS 132
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 5.4
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 326 VQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSMELHVDNLENKDYL 505
+QK Y+ WD+SDK V ++E N L K K T S L L D
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVVCWIEEHN-DDLSKRTQELKSTYYSERL--SKLLRSDRK 2251
Query: 506 LVINKLLEPINVADSHWKQK 565
+I+ L + + D + K++
Sbjct: 2252 GMIDSLAQVLTELDENEKKE 2271
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 572 YLFFVSNDCLPHL 534
++FFV ND LPHL
Sbjct: 329 FIFFVGNDFLPHL 341
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 338 TSFALELMYLLWVLVIL-PLASKFPFLLMLLV 246
TS+ ++ MY W+L+ L L S F LLV
Sbjct: 91 TSYMVDYMYFSWILIFLAALTSVKVFAFYLLV 122
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 479 DNLENKDYLLVINKLL 526
DNLEN DY+L + LL
Sbjct: 569 DNLENDDYVLALRDLL 584
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 341 DTSFALELMYLLWVLVILPLASKFPFLLMLLVLS 240
D S A+ +W++ LP+A LL+LL+ S
Sbjct: 1560 DKSRAVNGFIRIWIMAALPIAISTAALLILLMFS 1593
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 506 ASNLYFPDCPHAAPLIYLSIYNIPVPLV 423
A YF DC HA + + YN V +V
Sbjct: 268 AEQTYFQDCMHAVTVDLMRKYNKEVAIV 295
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 470 LHVDNLENKDYLLVINKLLEP--INVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKK 643
+HV++ E + YLL I L P + + K+ D + +L SN T H +++
Sbjct: 409 VHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRE 468
Query: 644 FE 649
E
Sbjct: 469 RE 470
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +2
Query: 425 PKEQVYCKLTDKSMELHVDNLENKDYLLV 511
PK+ +C+L + + H++ L++K + L+
Sbjct: 331 PKQSDFCQLRNFLLYTHIEGLKHKTHKLI 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,198
Number of Sequences: 5004
Number of extensions: 50594
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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