Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J06
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 35 0.044
Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical pr... 30 1.2
U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical pr... 29 3.8
U41037-1|AAA82387.1| 629|Caenorhabditis elegans Gtpase activati... 28 5.0
AF118123-1|AAD13781.1| 629|Caenorhabditis elegans GTPase activa... 28 5.0
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z99281-2|CAB16506.2| 224|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +2
Query: 305 TTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCK---LTDKSMELH 475
T+S P K+ +K + D K K V+ K+ ++ +EQ+Y K D+ ++
Sbjct: 5 TSSEDVPENKQKSLKFEII--DARMKIFKDIVKSKSSESVKEEQIYQKSLEFFDEDLKSS 62
Query: 476 VDNLENKDYLLVINKLLEPINVAD 547
+++ N++ K LEP+NV D
Sbjct: 63 EESVSNEEIKTGSEKELEPLNVFD 86
>Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical
protein DH11.2 protein.
Length = 411
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 287 EVSPIPTTSTSAPVQKKYQVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYCKLTDKSM 466
++ +P V K +L YGWDQ + FV TL + YC L D
Sbjct: 21 DLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFGTFVH----RTLCSKVYYCALHDPVW 76
Query: 467 ELH 475
EL+
Sbjct: 77 ELY 79
>U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical
protein C05D11.9 protein.
Length = 752
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 533 INVADSHWKQKTDKVVIFLAKSNPNTTWSHMTEIEKK 643
++V+DS ++ D VI L +P TTW T ++ K
Sbjct: 297 LSVSDSVFQSSRDGEVINLLIEDPRTTWDRKTVLKHK 333
>U41037-1|AAA82387.1| 629|Caenorhabditis elegans Gtpase activating
protein familyprotein 1 protein.
Length = 629
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 341 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 514
QV + W + + K +V+L N H + ++ V C K T ++ N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479
Query: 515 NKLLE 529
+ ++
Sbjct: 480 CETMQ 484
>AF118123-1|AAD13781.1| 629|Caenorhabditis elegans GTPase
activating protein GAP-1 protein.
Length = 629
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 341 QVKLNVYGWDQSDKFVKVFVELKNVHTLPKEQVYC--KLTDKSMELHVDNLENKDYLLVI 514
QV + W + + K +V+L N H + ++ V C K T ++ N++NK+ + ++
Sbjct: 420 QVDRSRLAWKKVLHYKKRYVQLTNTHLIWQKDVQCAPKGTVPLSDIKFVNVDNKNIITIV 479
Query: 515 NKLLE 529
+ ++
Sbjct: 480 CETMQ 484
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 491 FPDCPHAAPLIYLSIYNIPVPLVVYEHSLVQQI-P*QIYPTGP 366
FP P + PL++ + P P V HS VQQ P I+PT P
Sbjct: 126 FPPAP-SVPLLHDRYFVPPPPPVPPRHSRVQQSPPVPIHPTPP 167
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
protein F39B1.1 protein.
Length = 1607
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 491 FPDCPHAAPLIYLSIYNIPVPLVVYEHSLVQQI-P*QIYPTGP 366
FP P + PL++ + P P V HS VQQ P I+PT P
Sbjct: 126 FPPAP-SVPLLHDRYFVPPPPPVPPRHSRVQQSPPVPIHPTPP 167
>Z99281-2|CAB16506.2| 224|Caenorhabditis elegans Hypothetical
protein Y57G11C.4 protein.
Length = 224
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 136 IQEIRSDIEEFNDLLKQAKRKKVQDLLSLXDQKT 237
+QEIR +EE NDLL Q + V++L S ++T
Sbjct: 44 VQEIRKSLEEVNDLLDQME-LVVRELESNTTERT 76
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 151 SDIEEFNDLLKQAKRKKVQDLLSLXDQKT*DRTNNIKRKGNFDANGSITNTHN 309
S + ND+ K+ K+KK + S +KT + N K+K ++ S T N
Sbjct: 244 STAPDSNDVSKKYKKKKNKKSKSKDKKKTASKKNKKKKKSKGESASSTPQTPN 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,228
Number of Sequences: 27780
Number of extensions: 277049
Number of successful extensions: 962
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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