Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J03
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 311 3e-85
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 36 0.025
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 5.0
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 6.6
Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical pr... 28 6.6
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 6.6
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 6.6
U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical p... 28 6.6
AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homo... 27 8.7
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 311 bits (763), Expect = 3e-85
Identities = 135/192 (70%), Positives = 163/192 (84%)
Frame = +1
Query: 73 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 252
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 253 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 432
+ FRDPYK+KT K +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKS 120
Query: 433 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 612
GDRG +ARASGN+ATVI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+L
Sbjct: 121 GDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLL 180
Query: 613 KAGXAYHKYKVK 648
KAG +YHKYK K
Sbjct: 181 KAGRSYHKYKAK 192
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 367 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 525
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 73 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 183
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 184 HGYIKGVVKDIIHDPGRGAPLAVVHFR 264
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 184 HGYIKGVVKDIIHDPGRGAPLAVVHFR 264
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +1
Query: 481 IGHNPDAKRTRVKLPSGAKKVL 546
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 121 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 246
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
>Z81586-6|CAB04697.2| 393|Caenorhabditis elegans Hypothetical
protein T05F1.8 protein.
Length = 393
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -1
Query: 647 LTLYLWYAXPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 528
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = -2
Query: 640 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 461
C+C Q CQ +QQQ C C A+P QTV + C QS + Q
Sbjct: 37 CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
Query: 460 RHVPDDLYHPFSLQDC 413
P Q C
Sbjct: 94 SAPAVSQCQPMCQQQC 109
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = -2
Query: 640 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 461
C+C Q CQ +QQQ C C A+P QTV + C QS + Q
Sbjct: 37 CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
Query: 460 RHVPDDLYHPFSLQDC 413
P Q C
Sbjct: 94 SAPAVSQCQPMCQQQC 109
>U49830-16|AAK31480.1| 392|Caenorhabditis elegans Hypothetical
protein C33F10.12 protein.
Length = 392
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -1
Query: 647 LTLYLWYAXPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 528
LT W+ +FK+ +++ RPPP +P L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352
>AF220526-1|AAF43009.1| 332|Caenorhabditis elegans DNAse II homolog
F09G8.2 protein.
Length = 332
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = -3
Query: 549 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHI 370
W +L+ + TL++ N SG+ TC +TS TH + ++ G L +S++ H
Sbjct: 209 WNDLISRQN---KVTLAVESWLNGSGDDIHTTCTSTSQTHDVTEMRVTG-LNFASSKDH- 263
Query: 369 SNFKSCFLSTINKLACVEPFGSNEELL 289
S + + S N + C E + L
Sbjct: 264 SKW-AVSNSQTNPIVCFEDMNRQKSQL 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,991
Number of Sequences: 27780
Number of extensions: 354725
Number of successful extensions: 875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -