Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_J01
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 93 3e-20
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 29 0.33
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.0
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.0
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 4.0
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 5.3
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 25 5.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 5.3
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 25 9.3
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 9.3
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 92.7 bits (220), Expect = 3e-20
Identities = 39/100 (39%), Positives = 64/100 (64%)
Frame = +2
Query: 191 SRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRIKFKTNLEHEYIQNF 370
SR ++LAW+N +IE+ G A Q D ++ +P+K++ F+ N E++YI N+
Sbjct: 4 SRQELLAWINQVTSLGLTRIEDCGKGYAMIQIFDSIYQ-DIPLKKVNFECNNEYQYINNW 62
Query: 371 KILQAGFKKMGVDKIVPIDKLVKGRFQDNFEFLQWFKKFF 490
K+LQ F K G+DK+V ++L + + QDN EF+QW K+F+
Sbjct: 63 KVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFW 102
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.33
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 314 PMKRIKFKTNLEHEYIQNFKILQAGFK 394
P KR+K KT L+HE+ + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +1
Query: 175 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 285
Y++ ++ ++S+ + SP+ + E+++ ++R +LPV
Sbjct: 58 YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 329 KFKTNLEHEYIQNFKILQAGFK 394
K TNLE+EY +KI+Q FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 331 FDSFHWYTAREQHVHELAIGGTCTQLF 251
FD WYT R + + L+I QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 5.3
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Frame = -1
Query: 366 FCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AAPVHNSSIF--------AKFDWRQSFTH 211
F IYSC++ + N L + TLP S+ + + + + ++ DW + F
Sbjct: 171 FSIYSCAEKISNTSLLLCTLPW-VRSLYKELMTRIFDGIVIGADGEFEDSETDWFRQF-E 228
Query: 210 ASISCRDRFSDVTFVEYT---FTAIFTMYQPLIKKFLTVNLSLF*TILLCEISYQIC*NF 40
A + R++ DV E T F + ++ + F T L + ILL ++ + F
Sbjct: 229 AQVEHRNQVEDVNEREDTESEFWILLSVAHVFLDAFTTKILRIVRPILLFPLAGKFLGRF 288
Query: 39 YPKTLT 22
P T
Sbjct: 289 IPGNFT 294
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 159 TFTAIFTMYQPLIKKFLTV 103
TF A FT Y PL+ +FL V
Sbjct: 45 TFMAPFTPYMPLLGRFLIV 63
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 309 VYQ*KESNLRQIWNMNIYRTLKYYKLVL 392
++Q S LR I N+N+Y+ + KL++
Sbjct: 654 IFQIHASQLRYIDNLNVYKNWAFRKLLI 681
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 24.6 bits (51), Expect = 9.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 381 CNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQ*AAPVHNSSIFAKFDW 229
C IL + S F L+ LFI P N S+ AAPV ++FA F W
Sbjct: 289 CQILAGLQFVSSCFFLSS-LFIS--PSNKESLVILFAAPVFLITLFAMFLW 336
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 6 DQRRTR*AFXDKNSNKFDNLSHTAKLFRI 92
DQR + DKNS+K D +H K+ ++
Sbjct: 705 DQRTSSAKKLDKNSSKADKKNHKLKMDKV 733
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,335
Number of Sequences: 5004
Number of extensions: 48154
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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