Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_I24
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   1.3  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   4.1  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   4.1  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.2  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 393  VTYVSLELFLFFLLMWSFIVFFLPKYFFPFIILSQQVMGIKHNISECNKC 244
            +T+V + L LFF  +    ++ LP +F   +I  Q +  +  N  + N C
Sbjct: 1519 ITFVDMTL-LFFRNVSDANLYSLPMFFGELLITQQSIFAVTANNMKINAC 1567


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 206 LEYIKCINLWLYIHLLHSEILCLIP 280
           L  ++  + W++I++LH+ +L L P
Sbjct: 106 LVLVRMTDYWIFINILHNALLVLFP 130


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 330 FLPKYFFPFIILSQQVMGIKHNISECNKCMYNQRFIHLIYSR 205
           F   +F  F+ +  +     HNI E +KC + Q F H    R
Sbjct: 252 FQDNFFRDFLKVCDEC-NFNHNIKEFSKCDFTQMFHHFEQKR 292


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 587 SLFTTIALVGLLKQDTSCPYTSVPLRFQNKLLVPFETSVPSAFSFQALPQPFVHF 423
           SLF   +L+ LL    +CP++S  L+F+   L+     +   F    L    V F
Sbjct: 511 SLFQRKSLIILLNGILNCPHSSYDLQFRAVSLLTGRIRLNVDFEVSVLASQLVFF 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,288
Number of Sequences: 5004
Number of extensions: 42787
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)