Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_I15
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   198   6e-52
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   198   6e-52
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.0  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   4.0  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   5.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   9.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  198 bits (483), Expect = 6e-52
 Identities = 93/147 (63%), Positives = 103/147 (70%)
 Frame = +2

Query: 176 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 355
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 356 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 535
           THRSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHR 143

Query: 536 IEKIPELPLVVADKVQEINKTKQGCHL 616
           IE+IPE+PLVV D VQ   KTK+   L
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVAL 170


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  198 bits (483), Expect = 6e-52
 Identities = 93/147 (63%), Positives = 103/147 (70%)
 Frame = +2

Query: 176 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 355
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 356 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 535
           THRSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHR 143

Query: 536 IEKIPELPLVVADKVQEINKTKQGCHL 616
           IE+IPE+PLVV D VQ   KTK+   L
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVAL 170


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 PTLKVGLPIDSFRYFSEAIPPEIYTNSGDKDHPP 29
           P+L  GLP  + R   + + PE Y +S  ++  P
Sbjct: 22  PSLTSGLPSGNVRILQKGMEPEDYLSSASQNEVP 55


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = -1

Query: 226 NIIDQVRTDGRLEHEREGLGCXPAPSHSSLSTPTLKVGLPIDSFRYFSEAIPPEIYTNSG 47
           ++I+  RT  ++E          +   S L+TPT    L     RY  +   P+      
Sbjct: 254 DMINSQRTKNKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFGITWH 313

Query: 46  DKDHPPCXRRCEK 8
           +K HP    R +K
Sbjct: 314 EKLHPGTFVRSQK 326


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 527 GHIIEKIPE-LPLVVADKVQEINKTKQGCH 613
           G++I  IP  LPL VA+K+++  +    CH
Sbjct: 650 GYVIYDIPRALPLKVAEKIKKSLRETDFCH 679


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 158 CTVSLFSEYTDTKGRATDRLISLL 87
           C V ++SEYT   G ++  L++L+
Sbjct: 492 CVVKIWSEYTKNTGESSPVLVALV 515


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 8   FFTPPXAWRMVFITAI 55
           FF  P  WRM FIT I
Sbjct: 59  FFPSPDNWRMSFITVI 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,529
Number of Sequences: 5004
Number of extensions: 46783
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)