Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_I13
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    26   0.15 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    20   9.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   9.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 55  KSKNHTNHNQNRKAHRNGIKKPRXDQARIHPWHGSK 162
           +  NH NHN N+  H +       +Q      H SK
Sbjct: 420 QDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 110 SKSQGKTRHESTLGMDPKFL 169
           S +  + RH STL +D K L
Sbjct: 234 SHTTDENRHSSTLDIDHKML 253


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 300 LCVYLLITNVHF 265
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 300 LCVYLLITNVHF 265
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 300 LCVYLLITNVHF 265
           +CV +++ NVHF
Sbjct: 318 ICVTVVVLNVHF 329


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 58  SKNHTNHNQNRKAHRN 105
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 58  SKNHTNHNQNRKAHRN 105
           + N+ N+N N+K + N
Sbjct: 100 NNNYNNNNYNKKLYYN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,205
Number of Sequences: 438
Number of extensions: 1545
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)