Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_I04
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 54 3e-08
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 32 0.14
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 29 1.3
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 27 3.0
04_04_1566 + 34458976-34459111,34459761-34459915,34459996-344600... 27 3.0
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 27 3.9
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 27 5.2
03_02_0827 + 11582974-11583027,11583210-11584358 26 6.9
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868... 26 9.1
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780... 26 9.1
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 26 9.1
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 54.0 bits (124), Expect = 3e-08
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +1
Query: 97 MVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 276
MV F C CG+ ++KPK+ H+ + + LSC+DC + F + + H +CI+E E+Y
Sbjct: 1 MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57
Query: 277 SGKG 288
KG
Sbjct: 58 GPKG 61
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 193 LSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAKEKXVRKNKCLGRNVA 345
LSC+DC + F + + H +CI+ E+Y K C G ++A
Sbjct: 85 LSCIDCGESFSQETVQGHAQCISGAEKYGPPKGQNKASMEIFPSCAGNHLA 135
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 47 HFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPKWKSIISLNVGIKIQ 190
H+A NS H+ + ++ + A + SLF+ P I + V + Q
Sbjct: 461 HYANFPNSVRKHILFVIFVLMDAEVRNSLFKEPVLHDAIKIGVNFRNQ 508
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 121 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 210
CG + + KVEK LT + NP +C +C
Sbjct: 199 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 228
>04_04_1566 +
34458976-34459111,34459761-34459915,34459996-34460091,
34460170-34460329,34460415-34460551,34460650-34460724,
34460826-34460864
Length = 265
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 121 CGESVQKPKVEKHYLTKCRNKNPNLSCMDC 210
CG + + KVEK LT + NP +C +C
Sbjct: 200 CGRAEAEEKVEKLNLTSEQINNPQSACGNC 229
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 326 HLFFLTXFSLAVKPFPEYLSSSVMHLI 246
HL LT F+ +V+PFPE ++ + L+
Sbjct: 128 HLDVLTVFTHSVQPFPEEITQAESQLV 154
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 109 TCSHCGESVQKP-KVEKHYLTKCRNKNPNLSCMDCFKDFLGKDY 237
TC CG S QKP +++H + ++ DC ++ KD+
Sbjct: 61 TCQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSYIRKDH 104
>03_02_0827 + 11582974-11583027,11583210-11584358
Length = 400
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 170 NVGIKIQICHVWTVSKIF*EKIMNRISSALLKKKDTLEKVS 292
N G+K+++ VWT+S + + + ++K+ TLE+V+
Sbjct: 249 NGGLKLRV--VWTISSLIAAATRHYLLREIVKEHPTLERVA 287
>07_03_0288 +
16285485-16285721,16285811-16286184,16286499-16286892,
16286917-16287806,16291189-16291446,16291518-16291628,
16291697-16291775,16291880-16291972,16292095-16292280
Length = 873
Score = 25.8 bits (54), Expect = 9.1
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 127 ESVQKPKVEKHYLTKCRNKNPNLS-CMDCFKDFLGKDYESHIKCITEEER 273
E+++KP YL CR PN + +D GK HIK +T EER
Sbjct: 639 EAMKKPVA---YLNPCRISKPNHTYTVD------GKKLPEHIKAMTPEER 679
>06_03_0083 +
16374830-16374922,16375917-16375974,16377893-16378089,
16378176-16378292,16378437-16378497,16378603-16378691,
16378808-16378882,16378992-16379080,16379203-16379252,
16379539-16379699,16380004-16380132,16380548-16380928
Length = 499
Score = 25.8 bits (54), Expect = 9.1
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +2
Query: 56 FKTNSPNSHVFYKKWLFLHAVI-VGSLFRSPKWKSIISLNVGIKIQICHVWTVSKIF*EK 232
F N P+ +F+ HA + F W SI+ + VGI +Q+ + ++
Sbjct: 312 FWFNRPDWVLFFIHLTLFHATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLY--A 369
Query: 233 IMNRISSALLK---KKDTLEKVSQLRRKX*EK 319
++ ++ S + K ++ T++ + R+K EK
Sbjct: 370 LVTQMGSNMKKTIFEEQTMKALMNWRKKAMEK 401
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 314 LTXFSLAVKPFPEYLSSSVMHLICDS*SFPRKSLKQSIH 198
L F PF E+L ++ + + S PR++L +IH
Sbjct: 88 LRAFDGLAAPFSEFLGTACADWVMPTSSAPRQTLSSNIH 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,680,161
Number of Sequences: 37544
Number of extensions: 162778
Number of successful extensions: 343
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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