Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_I04
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.44 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 127 ESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGK 285
           E + + KV +++  K +NK  N++   C K  L K    H+     E  YSGK
Sbjct: 584 EILGEAKVLQNFDIKDKNKKVNVAGCRCVKGILLKSGLYHV-LRGNENIYSGK 635


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 219 IFETVHT*QIWIFIPTFSEIML 154
           IF  + T  +W+F P+F+   L
Sbjct: 211 IFAMIGTIFLWLFWPSFNSAAL 232


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  QILIILKFKVIHFAFKTNSPNSHVFYKKWL 103
           +++ +LK ++ ++ F T  P   +    W+
Sbjct: 235 EVVFVLKRRLGYYLFHTYIPTCLIVIMSWV 264


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 107 KTTISCKTRV 78
           K TI CKTR+
Sbjct: 340 KQTICCKTRI 349


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 113 HVKTTISCKTR 81
           H+ TTI C T+
Sbjct: 958 HITTTIDCSTQ 968


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,067
Number of Sequences: 438
Number of extensions: 1910
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)